Problems restoring data to new installation

[ttortosa]

Hi all,

I have problems on my Alfresco Installation (Alfresco 3C Labs on Debian, Derby Database). I've made a new installation, with same version, same computer and database. It startups successfully, but when I copy all alf_data contents to new installation (except lucene-indexes, i cp backup-lucene-indexes and rename it to lucene-indexes). When I start the first time Alfresco, bootstrap errors are shown in alfresco.log and tomcat remains deploying alfresco webapp.

This is the log:

21:25:08,961 INFO  [org.alfresco.config.xml.XMLConfigService$PropertyConfigurer] Loading properties file from class path resource [alfresco/file-servers.properties]
21:25:13,058 ERROR [org.alfresco.repo.content.transform.swf.PDFToSWFContentTransformer] Failed to start SWF2PDF transformer: 
Execution result: 
   os:         Linux
   command:    pdf2swf -V
   succeeded:  false
   exit code:  1
   out:        
   err:        Cannot run program "pdf2swf": java.io.IOException: error=2, No such file or directory
21:25:16,839 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.DerbyDialect.
21:25:16,840 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Alfresco is using the Apache Derby default database. Please only use this while evaluating Alfresco, it is NOT recommended for production or deployment!
21:25:16,967 ERROR [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema auto-update failed
java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.javaException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement20.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement30.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement40.<init>(Unknown Source)
   at org.apache.derby.jdbc.Driver40.newEmbedPreparedStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.prepareMetaDataStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.prepareSPS(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQueryUsingSystemTables(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getTables(Unknown Source)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.countAppliedPatches(SchemaBootstrap.java:372)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.updateSchema(SchemaBootstrap.java:613)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1121)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:246)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:355)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
   … 54 more
Caused by: java.lang.ArrayIndexOutOfBoundsException: 0
   at org.apache.derby.impl.sql.GenericParameterValueSet.initialize(Unknown Source)
   at org.apache.derby.impl.sql.execute.BaseActivation.setupActivation(Unknown Source)
   at org.apache.derby.impl.sql.GenericActivationHolder.<init>(Unknown Source)
   at org.apache.derby.impl.sql.GenericPreparedStatement.getActivation(Unknown Source)
   … 47 more
21:25:16,969 ERROR [org.springframework.web.context.ContextLoader] Context initialization failed
org.alfresco.error.AlfrescoRuntimeException: Schema auto-update failed
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1190)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:246)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:355)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.javaException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement20.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement30.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement40.<init>(Unknown Source)
   at org.apache.derby.jdbc.Driver40.newEmbedPreparedStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.prepareMetaDataStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.prepareSPS(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQueryUsingSystemTables(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getTables(Unknown Source)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.countAppliedPatches(SchemaBootstrap.java:372)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.updateSchema(SchemaBootstrap.java:613)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1121)
   … 33 more
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
   … 54 more
Caused by: java.lang.ArrayIndexOutOfBoundsException: 0
   at org.apache.derby.impl.sql.GenericParameterValueSet.initialize(Unknown Source)
   at org.apache.derby.impl.sql.execute.BaseActivation.setupActivation(Unknown Source)
   at org.apache.derby.impl.sql.GenericActivationHolder.<init>(Unknown Source)
   at org.apache.derby.impl.sql.GenericPreparedStatement.getActivation(Unknown Source)
   … 47 more
21:25:16,970 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Excepción enviando evento inicializado de contexto a instancia de escuchador de clase org.springframework.web.context.ContextLoaderListener
org.alfresco.error.AlfrescoRuntimeException: Schema auto-update failed
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1190)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:246)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:355)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.javaException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement20.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement30.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement40.<init>(Unknown Source)
   at org.apache.derby.jdbc.Driver40.newEmbedPreparedStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.prepareMetaDataStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.prepareSPS(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQueryUsingSystemTables(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getTables(Unknown Source)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.countAppliedPatches(SchemaBootstrap.java:372)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.updateSchema(SchemaBootstrap.java:613)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1121)
   … 33 more
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
   … 54 more
Caused by: java.lang.ArrayIndexOutOfBoundsException: 0
   at org.apache.derby.impl.sql.GenericParameterValueSet.initialize(Unknown Source)
   at org.apache.derby.impl.sql.execute.BaseActivation.setupActivation(Unknown Source)
   at org.apache.derby.impl.sql.GenericActivationHolder.<init>(Unknown Source)
   at org.apache.derby.impl.sql.GenericPreparedStatement.getActivation(Unknown Source)
   … 47 more
21:25:16,971 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Excepción enviando evento inicializado de contexto a instancia de escuchador de clase org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Schema auto-update failed
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1190)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:246)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:355)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:244)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:187)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.newEmbedSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.Util.javaException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.wrapInSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.TransactionResourceImpl.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.ConnectionChild.handleException(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement20.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement30.<init>(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedPreparedStatement40.<init>(Unknown Source)
   at org.apache.derby.jdbc.Driver40.newEmbedPreparedStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedConnection.prepareMetaDataStatement(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.prepareSPS(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQueryUsingSystemTables(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getPreparedQuery(Unknown Source)
   at org.apache.derby.impl.jdbc.EmbedDatabaseMetaData.getTables(Unknown Source)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.countAppliedPatches(SchemaBootstrap.java:372)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.updateSchema(SchemaBootstrap.java:613)
   at org.alfresco.repo.domain.schema.SchemaBootstrap.onBootstrap(SchemaBootstrap.java:1121)
   … 33 more
Caused by: java.sql.SQLException: Java exception: '0: java.lang.ArrayIndexOutOfBoundsException'.
   at org.apache.derby.impl.jdbc.SQLExceptionFactory.getSQLException(Unknown Source)
   at org.apache.derby.impl.jdbc.SQLExceptionFactory40.wrapArgsForTransportAcrossDRDA(Unknown Source)
   … 54 more
Caused by: java.lang.ArrayIndexOutOfBoundsException: 0
   at org.apache.derby.impl.sql.GenericParameterValueSet.initialize(Unknown Source)
   at org.apache.derby.impl.sql.execute.BaseActivation.setupActivation(Unknown Source)
   at org.apache.derby.impl.sql.GenericActivationHolder.<init>(Unknown Source)
   at org.apache.derby.impl.sql.GenericPreparedStatement.getActivation(Unknown Source)
   … 47 more
21:25:19,624 INFO  [org.alfresco.web.scripts.DeclarativeRegistry] Registered 21 Web Scripts (+0 failed), 23 URLs
21:25:19,625 INFO  [org.alfresco.web.scripts.AbstractRuntimeContainer] Initialised Presentation Web Script Container (in 80.494ms)
21:25:19,854 INFO  [org.alfresco.web.scripts.DeclarativeRegistry] Registered 134 Web Scripts (+0 failed), 136 URLs
21:25:19,854 INFO  [org.alfresco.web.scripts.AbstractRuntimeContainer] Initialised WebFramework Web Script Container (in 227.11002ms)
21:25:19,877 INFO  [org.alfresco.web.site.FrameworkHelper] Successfully Initialized Web Framework
21:25:51,732 INFO  [org.alfresco.web.site.FrameworkHelper] Successfully Initialized Web Framework
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[fast3r]

Are you sure that database access is configured correctly in custom-repository.properties ?
Maybe you need to specify the correct db where you have stored the backup, Alfresco could be logging into an empty database and fails to create schemas…