Not all patches could be applied

[onlaed]

I have a standard Alfresco 1.2.1 instance.  When i upgrade to 1.3.1 i am getting the following error.  I am using MySQL 5 and tomcat.  I have also noticed that temporary tables are still in the database after the upgrade sql finish running.

12:09:22,765 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] Checking for patches to apply …
12:09:26,296 ERROR [org.alfresco.repo.admin.patch.PatchServiceImpl] Please follow an upgrade path via server version 1.2.1
12:09:26,312 ERROR [org.alfresco.repo.admin.patch.PatchExecuter]
=== Failed to apply patch         ===
ID: patch.contentPermission
RESULT:
Please follow an upgrade path via server version 1.2.1
=====================================
12:09:26,312 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.descriptorUpdate
RESULT:
Repository descriptor updated
=====================================
12:09:26,312 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.emailTemplatesContent
RESULT:
Imported the Email Templates into the default folder.
=====================================
12:09:26,312 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.emailTemplatesFolder
RESULT:
The email templates folder was successfully created: workspace://SpacesStore/9f869840-0c40-11db-9677-e3dc014dc72b
=====================================
12:09:26,312 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.topLevelGroupParentChildAssociationTypePatch
RESULT:
null
=====================================
12:09:26,312 ERROR [org.springframework.web.context.ContextLoader] Context initialization failed
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
   at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:910)
   at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:873)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:474)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1118)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:310)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
   at org.apache.catalina.core.StandardService.start(StandardService.java:450)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:551)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:275)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
12:09:26,328 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
   at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:910)
   at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:873)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:474)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1118)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:310)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
   at org.apache.catalina.core.StandardService.start(StandardService.java:450)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:551)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:275)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
12:09:26,328 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
   at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:910)
   at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:873)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:474)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1118)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:310)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
   at org.apache.catalina.core.StandardService.start(StandardService.java:450)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:551)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:275)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
12:09:26,343 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context destroyed event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
   at org.apache.catalina.startup.HostConfig.deployDirectory(HostConfig.java:910)
   at org.apache.catalina.startup.HostConfig.deployDirectories(HostConfig.java:873)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:474)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1118)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:310)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
   at org.apache.catalina.core.StandardService.start(StandardService.java:450)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:551)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:275)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:413)
ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1175)
   at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:527)
   at org.apache.catalina.manager.HTMLManagerServlet.doGet(HTMLManagerServlet.java:104)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
   at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252)
   at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
   at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
   at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
   at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:524)
   at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
   at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
   at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
   at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
   at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:831)
   at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:639)
   at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1203)
   at java.lang.Thread.run(Unknown Source)
ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1175)
   at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:527)
   at org.apache.catalina.manager.HTMLManagerServlet.doGet(HTMLManagerServlet.java:104)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
   at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252)
   at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
   at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
   at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
   at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:524)
   at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
   at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
   at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
   at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
   at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:831)
   at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:639)
   at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1203)
   at java.lang.Thread.run(Unknown Source)
ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context destroyed event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
   at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
   at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3727)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4162)
   at org.apache.catalina.manager.ManagerServlet.start(ManagerServlet.java:1175)
   at org.apache.catalina.manager.HTMLManagerServlet.start(HTMLManagerServlet.java:527)
   at org.apache.catalina.manager.HTMLManagerServlet.doGet(HTMLManagerServlet.java:104)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:689)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:802)
   at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:252)
   at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:173)
   at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:213)
   at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:178)
   at org.apache.catalina.authenticator.AuthenticatorBase.invoke(AuthenticatorBase.java:524)
   at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:126)
   at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:105)
   at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:107)
   at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:148)
   at org.apache.coyote.http11.Http11AprProcessor.process(Http11AprProcessor.java:831)
   at org.apache.coyote.http11.Http11AprProtocol$Http11ConnectionHandler.process(Http11AprProtocol.java:639)
   at org.apache.tomcat.util.net.AprEndpoint$Worker.run(AprEndpoint.java:1203)
   at java.lang.Thread.run(Unknown Source)

[bartr]

see http://forums.alfresco.com/viewtopic.php?t=2278&highlight=

[alex]

Ooookay… upgrading to v1.3 is a big mess.

I did the following:

1. Download 1.3.0 WAR file.
2. Get the correct MySQL SQL file for updating from SVN (but not from the latest release, because the file is gone in the newest versions, I got it from the release at the end of July).
3. Changed the lowercase t_ and externalkeys to the correct case in the MySQL SQL file.
4. Download 1.2.1 WAR file.
5. Shutdown Tomcat.
6. Deploy 1.2.1 WAR file.
7. Restart Tomcat.
8. Look at shiny new Alfresco 1.2.1.
9. Shutdown Tomcat.
10. Install the MySQL update file as prepared above.
11. Copy 1.3 WAR file to webapps/ directory.
12. Delete alfresco subdirectory in webapps/ directory.
13. Start Tomcat.

And then I get the following error (the same as given above):

20:51:32,233 ERROR [org.alfresco.repo.content.transform.magick.AbstractImageMagickContentTransformer] ImageMagickContentTransformer not available: Failed to execute command: imconvert /opt/alfresco/tomcat/temp/Alfresco/ImageMagickContentTransformer_init_source_45623.gif  /opt/alfresco/tomcat/temp/Alfresco/ImageMagickContentTransformer_init_target_45624.png
20:51:36,235 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] Checking for patches to apply …
20:51:38,123 ERROR [org.alfresco.repo.admin.patch.PatchServiceImpl] Please follow an upgrade path via server version 1.2.1
20:51:38,174 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.emailTemplatesFolder
RESULT:
The email templates folder was successfully created: workspace://SpacesStore/09745621-4d90-11db-98c2-a53f0317e8d3
=====================================
20:51:38,174 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.topLevelGroupParentChildAssociationTypePatch
RESULT:
null
=====================================
20:51:38,174 INFO  [org.alfresco.repo.admin.patch.PatchExecuter]
=== Applied patch                 ===
ID: patch.emailTemplatesContent
RESULT:
Imported the Email Templates into the default folder.
=====================================
20:51:38,175 ERROR [org.alfresco.repo.admin.patch.PatchExecuter]
=== Failed to apply patch         ===
ID: patch.contentPermission
RESULT:
Please follow an upgrade path via server version 1.2.1
=====================================
20:51:38,179 ERROR [org.springframework.web.context.ContextLoader] Context initialization failed
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
        at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
        at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
        at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
        at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
        at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
        at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
        at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
        at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3669)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4104)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
        at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:788)
        at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:677)
        at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:473)
        at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1102)
        at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
        at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
        at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
        at org.apache.catalina.core.StandardService.start(StandardService.java:450)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:683)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:537)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:271)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:409)
20:51:38,183 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
        at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
        at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
        at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
        at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
        at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
        at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
        at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
        at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3669)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4104)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
        at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:788)
        at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:677)
        at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:473)
        at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1102)
        at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
        at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
        at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
        at org.apache.catalina.core.StandardService.start(StandardService.java:450)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:683)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:537)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:271)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:409)
20:51:38,187 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
        at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
        at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
        at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
        at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
        at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
        at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
        at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
        at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3669)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4104)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
        at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:788)
        at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:677)
        at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:473)
        at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1102)
        at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
        at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
        at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
        at org.apache.catalina.core.StandardService.start(StandardService.java:450)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:683)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:537)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:271)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:409)
20:51:38,193 ERROR [org.apache.catalina.core.ContainerBase.[Catalina].[localhost].[/alfresco]] Exception sending context destroyed event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: Not all patches could be applied
        at org.alfresco.repo.admin.patch.PatchExecuter.applyOutstandingPatches(PatchExecuter.java:99)
        at org.alfresco.repo.admin.patch.PatchExecuter.onApplicationEvent(PatchExecuter.java:112)
        at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:45)
        at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:225)
        at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:323)
        at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:134)
        at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
        at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
        at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
        at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3669)
        at org.apache.catalina.core.StandardContext.start(StandardContext.java:4104)
        at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:759)
        at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:739)
        at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:524)
        at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:788)
        at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:677)
        at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:473)
        at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1102)
        at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
        at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1020)
        at org.apache.catalina.core.StandardHost.start(StandardHost.java:718)
        at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1012)
        at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:442)
        at org.apache.catalina.core.StandardService.start(StandardService.java:450)
        at org.apache.catalina.core.StandardServer.start(StandardServer.java:683)
        at org.apache.catalina.startup.Catalina.start(Catalina.java:537)
        at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
        at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
        at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
        at java.lang.reflect.Method.invoke(Method.java:585)
        at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:271)
        at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:409)


The given advice (looking at the other thread) doesn't help much, unfortunately: The new MySQL upgrade definitions already increase the patch ID size.

[derek]

Hi,

Sorry about the issue.

http://issues.alfresco.com/browse/AR-933

It is not major, for now, as we are in the certification phases for 1.4 and there is a workaround.

To get the system running, the patch can be made to apply to a limited schema range, e.g. 0 to 1, in the patch-services-context.xml.  Then it will get an entry in the applied_patch table.  Ofcourse, it will not have fixed what it should have.

Regards

[lasry]

hi,

here's my properties :

    <bean id="patch.contentPermission" class="org.alfresco.repo.admin.patch.impl.ContentPermissionPatch" parent="basePatch" >
        <property name="id"><value>patch.contentPermission</value></property>
        <property name="description"><value>patch.contentPermission.description</value></property>
        <property name="fixesFromSchema"><value>0</value></property>
        <property name="fixesToSchema"><value>1</value></property>
        <property name="targetSchema"><value>2</value></property>
        <property name="sessionFactory">
            <ref bean="sessionFactory" />
        </property>
        <property name="dependsOn">
            <list>
                <ref bean="patch.updateGuestPermission" />
            </list>
        </property>
    </bean>

But i still can't apply the patch :

ERROR [org.alfresco.repo.admin.patch.PatchExecuter]
=== Failed to apply patch         ===
ID: patch.contentPermission
RESULT:
Please follow an upgrade path via server version 1.2.1

emailTemplatesFolder and topLevelGroupParentChildAssociationTypePatch patches are OK.

[derek]

This issue has now been fixed for the 1.3.2 Enterprise release and the fix will be carried forward to 1.4

Regards