Mike, note that the problem is present also with Liferay Portal V.4.3.0 and V.4.3.1
For your comodity, I'll put below two experiences from the Liferay forum:
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I've solved my pro… Just put all css and js to the end of the jsp file.
IE won't reconize them if they are placed before html body.
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I've recently discovered that IE6 & IE7 doesn't like the "<!–" HTML comment tags before the javascript, especially if the content of the portlet is generated on the fly (like AJAX or when we add the portlet for the first time). IE echo out something like "syntax error". I removed these comments tags and things seem to work fine now
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I hope this helps.
Thank you!
Ivano