Dashboard never loads and manager is requested to join

[gcousins]

One of my users has a site called "HR Sharedit", it's one of two that she owns. When she navigates to HR Sharedit, the dashboard never fully loads - the "Getting Started" dashlet is the only one that can be seen. The only button she can see on the right side is "Request to join", even though she's manager of the site. The other normal buttons do not show.
When the site is loaded the server's CPU and ram usage rise drastically.
I've tried rebuilding the indexes but that didn't work. Explorer works perfectly.
It's running as a vm on ESX 4, the latest build from Jumpbox.

I can't post the full log because it's too long, this is the first half…

06:06:06,840 ERROR [org.alfresco.repo.activities.feed.AbstractFeedGenerator] Exception during generation of feeds
com.ibatis.common.jdbc.exception.NestedSQLException:  
— The error occurred in alfresco/ibatis/#resource.dialect#/activities-common-SqlMap.xml. 
— The error occurred while executing query. 
— Check the        select max(sequence_id) as maxId       from alf_activity_post       where status = 'POSTED'    . 
— Check the SQL Statement (preparation failed). 
— Cause: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:201)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryForObject(MappedStatement.java:120)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForObject(SqlMapExecutorDelegate.java:518)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForObject(SqlMapExecutorDelegate.java:493)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForObject(SqlMapSessionImpl.java:106)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForObject(SqlMapSessionImpl.java:110)
   at com.ibatis.sqlmap.engine.impl.SqlMapClientImpl.queryForObject(SqlMapClientImpl.java:86)
   at org.alfresco.repo.domain.activities.ibatis.ActivityPostDAOImpl.getMaxActivitySeq(ActivityPostDAOImpl.java:53)
   at org.alfresco.repo.activities.feed.local.LocalFeedGenerator.generate(LocalFeedGenerator.java:59)
   at org.alfresco.repo.activities.feed.AbstractFeedGenerator.execute(AbstractFeedGenerator.java:137)
   at org.alfresco.repo.activities.feed.FeedGeneratorJob.execute(FeedGeneratorJob.java:50)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at sun.reflect.GeneratedMethodAccessor427.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.util.AutoCommitInterceptor.invoke(AutoCommitInterceptor.java:35)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy79.getConnection(Unknown Source)
   at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(DataSourceUtils.java:113)
   at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:213)
   at $Proxy198.prepareStatement(Unknown Source)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.prepareStatement(SqlExecutor.java:541)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.executeQuery(SqlExecutor.java:219)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.sqlExecuteQuery(MappedStatement.java:221)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:189)
   … 12 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 43 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 44 more
06:06:07,286 ERROR [org.quartz.core.JobRunShell] Job DEFAULT.ftsIndexerJobDetail threw an unhandled Exception:
org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:596)
   at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:371)
   at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:336)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:102)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy93.index(Unknown Source)
   at org.alfresco.repo.search.impl.lucene.fts.FTSIndexerJob.execute(FTSIndexerJob.java:46)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:74)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:426)
   at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
   at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
   at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
   at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:555)
   … 9 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor389.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:423)
   … 14 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor389.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 30 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 31 more
06:06:07,159 ERROR [org.alfresco.repo.activities.post.lookup.PostLookup] Exception during select of posts
com.ibatis.common.jdbc.exception.NestedSQLException:  
— The error occurred in alfresco/ibatis/#resource.dialect#/activities-common-SqlMap.xml. 
— The error occurred while executing query. 
— Check the               select           sequence_id as id,          activity_data as activityData,          activity_type as activityType,          post_user_id as userId,          post_date as postDate,          job_task_node as jobTaskNode,          site_network as siteNetwork,          app_tool as appTool,          status as status       from           alf_activity_post       where           status = ?           . 
— Check the SQL Statement (preparation failed). 
— Cause: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:201)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryForList(MappedStatement.java:139)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForList(SqlMapExecutorDelegate.java:567)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForList(SqlMapExecutorDelegate.java:541)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForList(SqlMapSessionImpl.java:118)
   at com.ibatis.sqlmap.engine.impl.SqlMapClientImpl.queryForList(SqlMapClientImpl.java:94)
   at org.alfresco.repo.domain.activities.ibatis.ActivityPostDAOImpl.selectPosts(ActivityPostDAOImpl.java:43)
   at org.alfresco.repo.activities.post.lookup.PostLookup.execute(PostLookup.java:116)
   at org.alfresco.repo.activities.post.lookup.PostLookupJob.execute(PostLookupJob.java:50)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor389.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at sun.reflect.GeneratedMethodAccessor427.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.util.AutoCommitInterceptor.invoke(AutoCommitInterceptor.java:35)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy79.getConnection(Unknown Source)
   at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(DataSourceUtils.java:113)
   at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:213)
   at $Proxy198.prepareStatement(Unknown Source)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.prepareStatement(SqlExecutor.java:541)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.executeQuery(SqlExecutor.java:219)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.sqlExecuteQuery(MappedStatement.java:221)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:189)
   … 10 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor389.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 41 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 42 more
06:06:07,652 ERROR [org.quartz.core.ErrorLogger] Job (DEFAULT.ftsIndexerJobDetail threw an exception.
org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection]
   at org.quartz.core.JobRunShell.run(JobRunShell.java:213)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:596)
   at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:371)
   at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:336)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:102)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy93.index(Unknown Source)
   at org.alfresco.repo.search.impl.lucene.fts.FTSIndexerJob.execute(FTSIndexerJob.java:46)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   … 1 more
Caused by: org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:74)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:426)
   at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
   at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
   at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
   at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:555)
   … 9 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor389.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:423)
   … 14 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor389.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 30 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 31 more
06:07:05,486 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/repository.properties]
06:07:05,515 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/domain/transaction.properties]
06:07:05,516 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from file [/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/module/org_alfresco_module_dod5015/alfresco-global.properties]
06:07:05,516 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from URL [file:/opt/alfresco/tomcat/shared/classes/alfresco-global.properties]
06:07:05,656 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:29,245 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor Repository Template Processor for extension ftl
06:07:29,249 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor Repository Script Processor for extension js
06:07:37,319 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.MySQLInnoDBDialect.
06:07:39,314 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] No changes were made to the schema.
06:07:40,133 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'sysAdmin' subsystem, ID: [sysAdmin, default]
06:07:40,257 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:40,270 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'sysAdmin' subsystem, ID: [sysAdmin, default] complete
06:07:42,930 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'thirdparty' subsystem, ID: [thirdparty, default]
06:07:42,953 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:44,652 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'thirdparty' subsystem, ID: [thirdparty, default] complete
06:07:44,653 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'OOoDirect' subsystem, ID: [OOoDirect, default]
06:07:44,681 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:45,499 WARN  [org.alfresco.util.OpenOfficeConnectionTester] An initial OpenOffice connection could not be established.
06:07:45,522 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'OOoDirect' subsystem, ID: [OOoDirect, default] complete
06:07:47,738 WARN  [org.alfresco.repo.node.index.FullIndexRecoveryComponent] The indexes are not synchronized with the database.
06:07:48,383 INFO  [org.alfresco.repo.admin.ConfigurationChecker] The Alfresco root data directory ('dir.root') is: /var/data/alf_data
06:07:48,532 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] Checking for patches to apply …
06:07:48,835 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] No patches were required.
06:07:49,040 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Found 3 module(s).
06:07:49,211 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org_alfresco_module_dod5015' version 1.0.
06:07:49,778 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org.alfresco.module.vti' version 1.2.
06:07:49,901 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org_alfresco_module_dod5015_share' version 1.0.
06:07:50,057 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'fileServers' subsystem, ID: [fileServers, default]
06:07:50,098 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:50,545 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
06:07:50,579 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:50,776 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1] complete
06:07:50,806 ERROR [org.alfresco.fileserver] Failed to get local domain/workgroup name, using default of WORKGROUP
06:07:50,806 ERROR [org.alfresco.fileserver] (This may be due to firewall settings or incorrect <broadcast> setting)
06:07:50,963 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'fileServers' subsystem, ID: [fileServers, default] complete
06:07:50,963 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'imap' subsystem, ID: [imap, default]
06:07:50,992 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:51,120 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'imap' subsystem, ID: [imap, default] complete
06:07:51,120 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'email' subsystem, ID: [email, outbound]
06:07:51,151 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:51,275 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'email' subsystem, ID: [email, outbound] complete
06:07:51,275 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'email' subsystem, ID: [email, inbound]
06:07:51,303 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:51,396 WARN  [org.springframework.beans.GenericTypeAwarePropertyDescriptor] Invalid JavaBean property 'blockedSenders' being accessed! Ambiguous write methods found next to actually used [public void org.alfresco.email.server.EmailServer.setBlockedSenders(java.util.List)]: [public void org.alfresco.email.server.EmailServer.setBlockedSenders(java.lang.String)]
06:07:51,397 WARN  [org.springframework.beans.GenericTypeAwarePropertyDescriptor] Invalid JavaBean property 'allowedSenders' being accessed! Ambiguous write methods found next to actually used [public void org.alfresco.email.server.EmailServer.setAllowedSenders(java.util.List)]: [public void org.alfresco.email.server.EmailServer.setAllowedSenders(java.lang.String)]
06:07:51,446 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'email' subsystem, ID: [email, inbound] complete
06:07:51,453 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] Enabled - calculate missing user usages …
06:07:51,498 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] Found 0 users to recalculate
06:07:51,498 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] … calculated missing usages for 0 users
06:07:51,498 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'Synchronization' subsystem, ID: [Synchronization, default]
06:07:51,529 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:07:51,635 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'Synchronization' subsystem, ID: [Synchronization, default] complete
06:07:51,837 INFO  [org.alfresco.service.descriptor.DescriptorService] Alfresco JVM - v1.6.0_20-b02; maximum heap size 1758.250MB
06:07:51,838 INFO  [org.alfresco.service.descriptor.DescriptorService] Alfresco started (Community): Current version 3.3.0 (2765) schema 4009 - Originally installed version 3.0.0 (b 1164) schema 131
06:07:58,168 INFO  [org.alfresco.module.vti.VtiServer] Vti server started successfully on port: 7070
06:08:00,448 INFO  [org.alfresco.util.OpenOfficeConnectionTester] The OpenOffice connection was re-established.
06:08:20,327 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 407 Web Scripts (+0 failed), 652 URLs
06:08:20,327 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 2 Package Description Documents (+0 failed)
06:08:20,327 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 1 Schema Description Documents (+0 failed)
06:08:20,329 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Repository Web Script Container (in 21308.305ms)
06:08:20,330 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:20,332 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
06:08:20,780 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'wcm_deployment_receiver' subsystem, ID: [wcm_deployment_receiver, default]
06:08:20,819 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
06:08:20,966 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'wcm_deployment_receiver' subsystem, ID: [wcm_deployment_receiver, default] complete
06:08:28,555 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 51 Web Scripts (+0 failed), 58 URLs
06:08:28,557 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 8 Package Description Documents (+0 failed)
06:08:28,557 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 0 Schema Description Documents (+0 failed)
06:08:28,573 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Spring Surf Container Web Script Container (in 620.8899ms)
06:08:28,793 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:28,946 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
06:08:28,970 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:28,976 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
06:08:29,000 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:29,005 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
06:08:36,060 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 225 Web Scripts (+0 failed), 232 URLs
06:08:36,062 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 8 Package Description Documents (+0 failed)
06:08:36,062 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 0 Schema Description Documents (+0 failed)
06:08:36,117 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Spring Surf Container Web Script Container (in 2183.2793ms)
06:08:36,225 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:36,365 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
06:08:36,516 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:36,522 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
06:08:36,597 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
06:08:36,602 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
08:08:33,586 ERROR [org.springframework.extensions.webscripts.AbstractRuntime] Exception from executeScript - redirecting to status template error: 05100001 Wrapped Exception (with status template): 05100007 Failed to execute script 'classpath*:alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js': 05100006 Content conversion failed:
   reader: ContentAccessor[ contentUrl=store://2010/6/4/12/55/afda4df0-502a-430d-98b8-3ea86fa1bb1b.bin, mimetype=application/vnd.openxmlformats-officedocument.wordprocessingml.document, size=14016, encoding=UTF-8, locale=en_IE]
   writer: ContentAccessor[ contentUrl=store://2010/6/10/8/8/75e9c099-9cb5-4404-8317-48c3445150b5.bin, mimetype=application/x-shockwave-flash, size=0, encoding=UTF-8, locale=en_GB]
   options: org.alfresco.service.cmr.repository.TransformationOptions@1cd3761
org.springframework.extensions.webscripts.WebScriptException: 05100001 Wrapped Exception (with status template): 05100007 Failed to execute script 'classpath*:alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js': 05100006 Content conversion failed:
   reader: ContentAccessor[ contentUrl=store://2010/6/4/12/55/afda4df0-502a-430d-98b8-3ea86fa1bb1b.bin, mimetype=application/vnd.openxmlformats-officedocument.wordprocessingml.document, size=14016, encoding=UTF-8, locale=en_IE]
   writer: ContentAccessor[ contentUrl=store://2010/6/10/8/8/75e9c099-9cb5-4404-8317-48c3445150b5.bin, mimetype=application/x-shockwave-flash, size=0, encoding=UTF-8, locale=en_GB]
   options: org.alfresco.service.cmr.repository.TransformationOptions@1cd3761
   at org.springframework.extensions.webscripts.AbstractWebScript.createStatusException(AbstractWebScript.java:731)
   at org.alfresco.repo.web.scripts.content.StreamContent.execute(StreamContent.java:204)
   at org.alfresco.repo.web.scripts.RepositoryContainer$2.execute(RepositoryContainer.java:367)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:321)
   at org.alfresco.repo.web.scripts.RepositoryContainer.transactionedExecute(RepositoryContainer.java:417)
   at org.alfresco.repo.web.scripts.RepositoryContainer.transactionedExecuteAs(RepositoryContainer.java:434)
   at org.alfresco.repo.web.scripts.RepositoryContainer.executeScript(RepositoryContainer.java:298)
   at org.springframework.extensions.webscripts.AbstractRuntime.executeScript(AbstractRuntime.java:307)
   at org.springframework.extensions.webscripts.AbstractRuntime.executeScript(AbstractRuntime.java:178)
   at org.springframework.extensions.webscripts.servlet.WebScriptServlet.service(WebScriptServlet.java:116)
   at javax.servlet.http.HttpServlet.service(HttpServlet.java:717)
   at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:290)
   at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:206)
   at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:233)
   at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:191)
   at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:128)
   at org.apache.catalina.valves.ErrorReportValve.invoke(ErrorReportValve.java:102)
   at org.apache.catalina.core.StandardEngineValve.invoke(StandardEngineValve.java:109)
   at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:286)
   at org.apache.coyote.http11.Http11Processor.process(Http11Processor.java:845)
   at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:583)
   at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:447)
   at java.lang.Thread.run(Thread.java:619)
Caused by: org.alfresco.scripts.ScriptException: 05100007 Failed to execute script 'classpath*:alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js': 05100006 Content conversion failed:
   reader: ContentAccessor[ contentUrl=store://2010/6/4/12/55/afda4df0-502a-430d-98b8-3ea86fa1bb1b.bin, mimetype=application/vnd.openxmlformats-officedocument.wordprocessingml.document, size=14016, encoding=UTF-8, locale=en_IE]
   writer: ContentAccessor[ contentUrl=store://2010/6/10/8/8/75e9c099-9cb5-4404-8317-48c3445150b5.bin, mimetype=application/x-shockwave-flash, size=0, encoding=UTF-8, locale=en_GB]
   options: org.alfresco.service.cmr.repository.TransformationOptions@1cd3761
   at org.alfresco.repo.jscript.RhinoScriptProcessor.execute(RhinoScriptProcessor.java:183)
   at org.alfresco.repo.processor.ScriptServiceImpl.executeScript(ScriptServiceImpl.java:268)
   at org.alfresco.repo.web.scripts.RepositoryScriptProcessor.executeScript(RepositoryScriptProcessor.java:102)
   at org.springframework.extensions.webscripts.AbstractWebScript.executeScript(AbstractWebScript.java:952)
   at org.alfresco.repo.web.scripts.content.StreamContent.execute(StreamContent.java:150)
   … 21 more
Caused by: org.alfresco.service.cmr.repository.ContentIOException: 05100006 Content conversion failed:
   reader: ContentAccessor[ contentUrl=store://2010/6/4/12/55/afda4df0-502a-430d-98b8-3ea86fa1bb1b.bin, mimetype=application/vnd.openxmlformats-officedocument.wordprocessingml.document, size=14016, encoding=UTF-8, locale=en_IE]
   writer: ContentAccessor[ contentUrl=store://2010/6/10/8/8/75e9c099-9cb5-4404-8317-48c3445150b5.bin, mimetype=application/x-shockwave-flash, size=0, encoding=UTF-8, locale=en_GB]
   options: org.alfresco.service.cmr.repository.TransformationOptions@1cd3761
   at org.alfresco.repo.content.transform.AbstractContentTransformer2.transform(AbstractContentTransformer2.java:170)
   at org.alfresco.repo.content.ContentServiceImpl.transform(ContentServiceImpl.java:537)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at net.sf.acegisecurity.intercept.method.aopalliance.MethodSecurityInterceptor.invoke(MethodSecurityInterceptor.java:80)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.model.ml.MLContentInterceptor.invoke(MLContentInterceptor.java:125)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.security.permissions.impl.ExceptionTranslatorMethodInterceptor.invoke(ExceptionTranslatorMethodInterceptor.java:43)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.audit.AuditComponentImpl.audit(AuditComponentImpl.java:279)
   at org.alfresco.repo.audit.AuditMethodInterceptor.proceed(AuditMethodInterceptor.java:163)
   at org.alfresco.repo.audit.AuditMethodInterceptor.invoke(AuditMethodInterceptor.java:140)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:107)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy49.transform(Unknown Source)
   at org.alfresco.repo.rendition.executer.AbstractTransformationRenderingEngine.render(AbstractTransformationRenderingEngine.java:70)
   at org.alfresco.repo.rendition.executer.AbstractRenderingEngine.executeImpl(AbstractRenderingEngine.java:310)
   at org.alfresco.repo.action.executer.ActionExecuterAbstractBase.execute(ActionExecuterAbstractBase.java:133)
   at org.alfresco.repo.action.ActionServiceImpl.directActionExecution(ActionServiceImpl.java:726)
   at org.alfresco.repo.action.ActionServiceImpl.executeActionImpl(ActionServiceImpl.java:658)
   at org.alfresco.repo.action.ActionServiceImpl.executeAction(ActionServiceImpl.java:526)
   at org.alfresco.repo.action.ActionServiceImpl.executeAction(ActionServiceImpl.java:512)
   at org.alfresco.repo.action.ActionServiceImpl.executeAction(ActionServiceImpl.java:735)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.repo.security.permissions.impl.AlwaysProceedMethodInterceptor.invoke(AlwaysProceedMethodInterceptor.java:34)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.security.permissions.impl.ExceptionTranslatorMethodInterceptor.invoke(ExceptionTranslatorMethodInterceptor.java:43)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.audit.AuditComponentImpl.audit(AuditComponentImpl.java:279)
   at org.alfresco.repo.audit.AuditMethodInterceptor.proceed(AuditMethodInterceptor.java:163)
   at org.alfresco.repo.audit.AuditMethodInterceptor.invoke(AuditMethodInterceptor.java:140)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:107)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy39.executeAction(Unknown Source)
   at org.alfresco.repo.rendition.PerformRenditionActionExecuter.executeRendition(PerformRenditionActionExecuter.java:278)
   at org.alfresco.repo.rendition.PerformRenditionActionExecuter.access$200(PerformRenditionActionExecuter.java:72)
   at org.alfresco.repo.rendition.PerformRenditionActionExecuter$2.doWork(PerformRenditionActionExecuter.java:194)
   at org.alfresco.repo.rendition.PerformRenditionActionExecuter$2.doWork(PerformRenditionActionExecuter.java:181)
   at org.alfresco.repo.security.authentication.AuthenticationUtil.runAs(AuthenticationUtil.java:508)
   at org.alfresco.repo.rendition.PerformRenditionActionExecuter.executeImpl(PerformRenditionActionExecuter.java:179)
   at org.alfresco.repo.action.executer.ActionExecuterAbstractBase.execute(ActionExecuterAbstractBase.java:133)
   at org.alfresco.repo.action.ActionServiceImpl.directActionExecution(ActionServiceImpl.java:726)
   at org.alfresco.repo.action.ActionServiceImpl.executeActionImpl(ActionServiceImpl.java:658)
   at org.alfresco.repo.action.ActionServiceImpl.executeAction(ActionServiceImpl.java:526)
   at sun.reflect.GeneratedMethodAccessor566.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.repo.security.permissions.impl.AlwaysProceedMethodInterceptor.invoke(AlwaysProceedMethodInterceptor.java:34)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.security.permissions.impl.ExceptionTranslatorMethodInterceptor.invoke(ExceptionTranslatorMethodInterceptor.java:43)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.audit.AuditComponentImpl.audit(AuditComponentImpl.java:279)
   at org.alfresco.repo.audit.AuditMethodInterceptor.proceedWithAudit(AuditMethodInterceptor.java:228)
   at org.alfresco.repo.audit.AuditMethodInterceptor.proceed(AuditMethodInterceptor.java:195)
   at org.alfresco.repo.audit.AuditMethodInterceptor.invoke(AuditMethodInterceptor.java:140)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:107)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy39.executeAction(Unknown Source)
   at org.alfresco.repo.rendition.RenditionServiceImpl.createAndExecuteRenditionAction(RenditionServiceImpl.java:219)
   at org.alfresco.repo.rendition.RenditionServiceImpl.render(RenditionServiceImpl.java:180)
   at org.alfresco.repo.thumbnail.ThumbnailServiceImpl.createThumbnailNode(ThumbnailServiceImpl.java:450)
   at org.alfresco.repo.thumbnail.ThumbnailServiceImpl.access$000(ThumbnailServiceImpl.java:55)
   at org.alfresco.repo.thumbnail.ThumbnailServiceImpl$1.doWork(ThumbnailServiceImpl.java:146)
   at org.alfresco.repo.thumbnail.ThumbnailServiceImpl$1.doWork(ThumbnailServiceImpl.java:144)
   at org.alfresco.repo.security.authentication.AuthenticationUtil.runAs(AuthenticationUtil.java:508)
   at org.alfresco.repo.thumbnail.ThumbnailServiceImpl.createThumbnail(ThumbnailServiceImpl.java:141)
   at org.alfresco.repo.thumbnail.ThumbnailServiceImpl.createThumbnail(ThumbnailServiceImpl.java:120)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.repo.security.permissions.impl.AlwaysProceedMethodInterceptor.invoke(AlwaysProceedMethodInterceptor.java:34)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.security.permissions.impl.ExceptionTranslatorMethodInterceptor.invoke(ExceptionTranslatorMethodInterceptor.java:43)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.alfresco.repo.audit.AuditComponentImpl.audit(AuditComponentImpl.java:279)
   at org.alfresco.repo.audit.AuditMethodInterceptor.proceed(AuditMethodInterceptor.java:189)
   at org.alfresco.repo.audit.AuditMethodInterceptor.invoke(AuditMethodInterceptor.java:140)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:107)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy117.createThumbnail(Unknown Source)
   at org.alfresco.repo.jscript.ScriptNode.createThumbnail(ScriptNode.java:2354)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.mozilla.javascript.MemberBox.invoke(MemberBox.java:155)
   at org.mozilla.javascript.NativeJavaMethod.call(NativeJavaMethod.java:243)
   at org.mozilla.javascript.optimizer.OptRuntime.call2(OptRuntime.java:76)
   at org.mozilla.javascript.gen.c9._c1(file:/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js:61)
   at org.mozilla.javascript.gen.c9.call(file:/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js)
   at org.mozilla.javascript.optimizer.OptRuntime.callName0(OptRuntime.java:108)
   at org.mozilla.javascript.gen.c9._c0(file:/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js:101)
   at org.mozilla.javascript.gen.c9.call(file:/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js)
   at org.mozilla.javascript.ContextFactory.doTopCall(ContextFactory.java:393)
   at org.mozilla.javascript.ScriptRuntime.doTopCall(ScriptRuntime.java:2834)
   at org.mozilla.javascript.gen.c9.call(file:/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js)
   at org.mozilla.javascript.gen.c9.exec(file:/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/templates/webscripts/org/alfresco/repository/thumbnail/thumbnail.get.js)
   at org.alfresco.repo.jscript.RhinoScriptProcessor.executeScriptImpl(RhinoScriptProcessor.java:453)
   at org.alfresco.repo.jscript.RhinoScriptProcessor.execute(RhinoScriptProcessor.java:179)
   … 25 more
Caused by: org.alfresco.service.cmr.repository.ContentIOException: 05100005 Content conversion failed:
   reader: ContentAccessor[ contentUrl=store:///opt/alfresco/tomcat/temp/Alfresco/ComplextTransformer_intermediate_docx_3057411607224066539.pdf, mimetype=application/pdf, size=211824, encoding=UTF-8, locale=en_GB]
   writer: ContentAccessor[ contentUrl=store://2010/6/10/8/8/75e9c099-9cb5-4404-8317-48c3445150b5.bin, mimetype=application/x-shockwave-flash, size=0, encoding=UTF-8, locale=en_GB]
   options: org.alfresco.service.cmr.repository.TransformationOptions@1cd3761
   at org.alfresco.repo.content.transform.AbstractContentTransformer2.transform(AbstractContentTransformer2.java:170)
   at org.alfresco.repo.content.transform.ComplexContentTransformer.transformInternal(ComplexContentTransformer.java:172)
   at org.alfresco.repo.content.transform.AbstractContentTransformer2.transform(AbstractContentTransformer2.java:161)
   … 150 more
Caused by: org.alfresco.service.cmr.repository.ContentIOException: 05100004 Transformation failed - status indicates an error:
Execution result:
   os:         Linux
   command:    [/usr/local/bin/pdf2swf, -T, 9, /opt/alfresco/tomcat/temp/Alfresco/RuntimeExecutableContentTransformerWorker_source_1501105748816256527.pdf, -o, /opt/alfresco/tomcat/temp/Alfresco/RuntimeExecutableContentTransformerWorker_target_3547126589356636528.swf]
   succeeded:  false
   exit code:  1
   out:       
   err:        Cannot run program "/usr/local/bin/pdf2swf": java.io.IOException: error=12, Cannot allocate memory
   at org.alfresco.repo.content.transform.RuntimeExecutableContentTransformerWorker.transform(RuntimeExecutableContentTransformerWorker.java:272)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.alfresco.repo.management.subsystems.SubsystemProxyFactory$1.invoke(SubsystemProxyFactory.java:71)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy47.transform(Unknown Source)
   at org.alfresco.repo.content.transform.ProxyContentTransformer.transformInternal(ProxyContentTransformer.java:60)
   at org.alfresco.repo.content.transform.AbstractContentTransformer2.transform(AbstractContentTransformer2.java:161)
   … 152 more
11:14:25,101 ERROR [org.quartz.core.JobRunShell] Job DEFAULT.ftsIndexerJobDetail threw an unhandled Exception:
org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:596)
   at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:371)
   at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:336)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:102)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy93.index(Unknown Source)
   at org.alfresco.repo.search.impl.lucene.fts.FTSIndexerJob.execute(FTSIndexerJob.java:46)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:74)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:426)
   at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
   at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
   at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
   at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:555)
   … 9 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:423)
   … 14 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 30 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 31 more
11:14:25,107 ERROR [org.quartz.core.ErrorLogger] Job (DEFAULT.ftsIndexerJobDetail threw an exception.
org.quartz.SchedulerException: Job threw an unhandled exception. [See nested exception: org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection]
   at org.quartz.core.JobRunShell.run(JobRunShell.java:213)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: org.springframework.transaction.CannotCreateTransactionException: Could not open Hibernate Session for transaction; nested exception is org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:596)
   at org.springframework.transaction.support.AbstractPlatformTransactionManager.getTransaction(AbstractPlatformTransactionManager.java:371)
   at org.springframework.transaction.interceptor.TransactionAspectSupport.createTransactionIfNecessary(TransactionAspectSupport.java:336)
   at org.springframework.transaction.interceptor.TransactionInterceptor.invoke(TransactionInterceptor.java:102)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy93.index(Unknown Source)
   at org.alfresco.repo.search.impl.lucene.fts.FTSIndexerJob.execute(FTSIndexerJob.java:46)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   … 1 more
Caused by: org.hibernate.exception.JDBCConnectionException: Cannot open connection
   at org.hibernate.exception.SQLStateConverter.convert(SQLStateConverter.java:74)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:43)
   at org.hibernate.exception.JDBCExceptionHelper.convert(JDBCExceptionHelper.java:29)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:426)
   at org.hibernate.jdbc.ConnectionManager.getConnection(ConnectionManager.java:144)
   at org.hibernate.jdbc.JDBCContext.connection(JDBCContext.java:119)
   at org.hibernate.transaction.JDBCTransaction.begin(JDBCTransaction.java:57)
   at org.hibernate.impl.SessionImpl.beginTransaction(SessionImpl.java:1326)
   at org.springframework.orm.hibernate3.HibernateTransactionManager.doBegin(HibernateTransactionManager.java:555)
   … 9 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at org.springframework.orm.hibernate3.LocalDataSourceConnectionProvider.getConnection(LocalDataSourceConnectionProvider.java:81)
   at org.hibernate.jdbc.ConnectionManager.openConnection(ConnectionManager.java:423)
   … 14 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

[gcousins]

This is the second half of the log…

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 30 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 31 more
11:14:25,353 ERROR [org.alfresco.repo.activities.feed.AbstractFeedGenerator] Exception during generation of feeds
com.ibatis.common.jdbc.exception.NestedSQLException:  
— The error occurred in alfresco/ibatis/#resource.dialect#/activities-common-SqlMap.xml. 
— The error occurred while executing query. 
— Check the        select max(sequence_id) as maxId       from alf_activity_post       where status = 'POSTED'    . 
— Check the SQL Statement (preparation failed). 
— Cause: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:201)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryForObject(MappedStatement.java:120)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForObject(SqlMapExecutorDelegate.java:518)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForObject(SqlMapExecutorDelegate.java:493)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForObject(SqlMapSessionImpl.java:106)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForObject(SqlMapSessionImpl.java:110)
   at com.ibatis.sqlmap.engine.impl.SqlMapClientImpl.queryForObject(SqlMapClientImpl.java:86)
   at org.alfresco.repo.domain.activities.ibatis.ActivityPostDAOImpl.getMaxActivitySeq(ActivityPostDAOImpl.java:53)
   at org.alfresco.repo.activities.feed.local.LocalFeedGenerator.generate(LocalFeedGenerator.java:59)
   at org.alfresco.repo.activities.feed.AbstractFeedGenerator.execute(AbstractFeedGenerator.java:137)
   at org.alfresco.repo.activities.feed.FeedGeneratorJob.execute(FeedGeneratorJob.java:50)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor331.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at sun.reflect.GeneratedMethodAccessor436.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.util.AutoCommitInterceptor.invoke(AutoCommitInterceptor.java:35)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy79.getConnection(Unknown Source)
   at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(DataSourceUtils.java:113)
   at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:213)
   at $Proxy198.prepareStatement(Unknown Source)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.prepareStatement(SqlExecutor.java:541)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.executeQuery(SqlExecutor.java:219)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.sqlExecuteQuery(MappedStatement.java:221)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:189)
   … 12 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor331.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 43 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 44 more
11:14:25,372 ERROR [org.alfresco.repo.activities.post.lookup.PostLookup] Exception during select of posts
com.ibatis.common.jdbc.exception.NestedSQLException:  
— The error occurred in alfresco/ibatis/#resource.dialect#/activities-common-SqlMap.xml. 
— The error occurred while executing query. 
— Check the               select           sequence_id as id,          activity_data as activityData,          activity_type as activityType,          post_user_id as userId,          post_date as postDate,          job_task_node as jobTaskNode,          site_network as siteNetwork,          app_tool as appTool,          status as status       from           alf_activity_post       where           status = ?           . 
— Check the SQL Statement (preparation failed). 
— Cause: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:201)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryForList(MappedStatement.java:139)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForList(SqlMapExecutorDelegate.java:567)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForList(SqlMapExecutorDelegate.java:541)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForList(SqlMapSessionImpl.java:118)
   at com.ibatis.sqlmap.engine.impl.SqlMapClientImpl.queryForList(SqlMapClientImpl.java:94)
   at org.alfresco.repo.domain.activities.ibatis.ActivityPostDAOImpl.selectPosts(ActivityPostDAOImpl.java:43)
   at org.alfresco.repo.activities.post.lookup.PostLookup.execute(PostLookup.java:116)
   at org.alfresco.repo.activities.post.lookup.PostLookupJob.execute(PostLookupJob.java:50)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor331.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at sun.reflect.GeneratedMethodAccessor436.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.util.AutoCommitInterceptor.invoke(AutoCommitInterceptor.java:35)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy79.getConnection(Unknown Source)
   at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(DataSourceUtils.java:113)
   at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:213)
   at $Proxy198.prepareStatement(Unknown Source)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.prepareStatement(SqlExecutor.java:541)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.executeQuery(SqlExecutor.java:219)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.sqlExecuteQuery(MappedStatement.java:221)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:189)
   … 10 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor331.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 41 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 42 more
11:15:29,675 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/repository.properties]
11:15:29,686 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/domain/transaction.properties]
11:15:29,687 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from file [/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/module/org_alfresco_module_dod5015/alfresco-global.properties]
11:15:29,688 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from URL [file:/opt/alfresco/tomcat/shared/classes/alfresco-global.properties]
11:15:29,839 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:15:53,871 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor Repository Template Processor for extension ftl
11:15:53,874 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor Repository Script Processor for extension js
11:16:01,458 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.MySQLInnoDBDialect.
11:16:03,467 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] No changes were made to the schema.
11:16:04,328 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'sysAdmin' subsystem, ID: [sysAdmin, default]
11:16:04,485 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:04,499 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'sysAdmin' subsystem, ID: [sysAdmin, default] complete
11:16:07,298 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'thirdparty' subsystem, ID: [thirdparty, default]
11:16:07,325 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:08,088 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'thirdparty' subsystem, ID: [thirdparty, default] complete
11:16:08,089 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'OOoDirect' subsystem, ID: [OOoDirect, default]
11:16:08,117 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:08,975 WARN  [org.alfresco.util.OpenOfficeConnectionTester] An initial OpenOffice connection could not be established.
11:16:08,999 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'OOoDirect' subsystem, ID: [OOoDirect, default] complete
11:16:11,204 WARN  [org.alfresco.repo.node.index.FullIndexRecoveryComponent] The indexes are not synchronized with the database.
11:16:11,955 INFO  [org.alfresco.repo.admin.ConfigurationChecker] The Alfresco root data directory ('dir.root') is: /var/data/alf_data
11:16:12,099 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] Checking for patches to apply …
11:16:12,429 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] No patches were required.
11:16:12,628 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Found 3 module(s).
11:16:12,801 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org_alfresco_module_dod5015' version 1.0.
11:16:13,374 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org.alfresco.module.vti' version 1.2.
11:16:13,503 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org_alfresco_module_dod5015_share' version 1.0.
11:16:13,704 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'fileServers' subsystem, ID: [fileServers, default]
11:16:13,744 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:14,220 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
11:16:14,390 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:14,627 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1] complete
11:16:14,659 ERROR [org.alfresco.fileserver] Failed to get local domain/workgroup name, using default of WORKGROUP
11:16:14,659 ERROR [org.alfresco.fileserver] (This may be due to firewall settings or incorrect <broadcast> setting)
11:16:14,839 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'fileServers' subsystem, ID: [fileServers, default] complete
11:16:14,840 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'imap' subsystem, ID: [imap, default]
11:16:14,868 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:14,995 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'imap' subsystem, ID: [imap, default] complete
11:16:14,995 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'email' subsystem, ID: [email, outbound]
11:16:15,020 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:15,135 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'email' subsystem, ID: [email, outbound] complete
11:16:15,135 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'email' subsystem, ID: [email, inbound]
11:16:15,157 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:15,227 WARN  [org.springframework.beans.GenericTypeAwarePropertyDescriptor] Invalid JavaBean property 'blockedSenders' being accessed! Ambiguous write methods found next to actually used [public void org.alfresco.email.server.EmailServer.setBlockedSenders(java.util.List)]: [public void org.alfresco.email.server.EmailServer.setBlockedSenders(java.lang.String)]
11:16:15,227 WARN  [org.springframework.beans.GenericTypeAwarePropertyDescriptor] Invalid JavaBean property 'allowedSenders' being accessed! Ambiguous write methods found next to actually used [public void org.alfresco.email.server.EmailServer.setAllowedSenders(java.util.List)]: [public void org.alfresco.email.server.EmailServer.setAllowedSenders(java.lang.String)]
11:16:15,274 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'email' subsystem, ID: [email, inbound] complete
11:16:15,277 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] Enabled - calculate missing user usages …
11:16:15,324 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] Found 0 users to recalculate
11:16:15,325 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] … calculated missing usages for 0 users
11:16:15,325 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'Synchronization' subsystem, ID: [Synchronization, default]
11:16:15,369 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:15,425 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'Synchronization' subsystem, ID: [Synchronization, default] complete
11:16:15,617 INFO  [org.alfresco.service.descriptor.DescriptorService] Alfresco JVM - v1.6.0_20-b02; maximum heap size 479.063MB
11:16:15,618 WARN  [org.alfresco.service.descriptor.DescriptorService] Alfresco JVM - WARNING - maximum heap size 479.063MB is less than recommended 512MB
11:16:15,618 INFO  [org.alfresco.service.descriptor.DescriptorService] Alfresco started (Community): Current version 3.3.0 (2765) schema 4009 - Originally installed version 3.0.0 (b 1164) schema 131
11:16:20,950 INFO  [org.alfresco.module.vti.VtiServer] Vti server started successfully on port: 7070
11:16:42,092 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 407 Web Scripts (+0 failed), 652 URLs
11:16:42,092 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 2 Package Description Documents (+0 failed)
11:16:42,092 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 1 Schema Description Documents (+0 failed)
11:16:42,095 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Repository Web Script Container (in 20462.385ms)
11:16:42,095 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:42,097 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:16:42,394 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'wcm_deployment_receiver' subsystem, ID: [wcm_deployment_receiver, default]
11:16:42,431 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
11:16:42,565 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'wcm_deployment_receiver' subsystem, ID: [wcm_deployment_receiver, default] complete
11:16:49,872 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 51 Web Scripts (+0 failed), 58 URLs
11:16:49,874 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 8 Package Description Documents (+0 failed)
11:16:49,874 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 0 Schema Description Documents (+0 failed)
11:16:49,889 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Spring Surf Container Web Script Container (in 775.0938ms)
11:16:50,215 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:50,384 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:16:50,409 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:50,415 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:16:50,438 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:50,444 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:16:57,243 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 225 Web Scripts (+0 failed), 232 URLs
11:16:57,245 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 8 Package Description Documents (+0 failed)
11:16:57,245 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 0 Schema Description Documents (+0 failed)
11:16:57,299 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Spring Surf Container Web Script Container (in 2109.9734ms)
11:16:57,539 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:57,678 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:16:57,784 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:57,790 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:16:57,860 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
11:16:57,865 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
11:17:00,335 INFO  [org.alfresco.util.OpenOfficeConnectionTester] The OpenOffice connection was re-established.
13:46:20,068 ERROR [org.alfresco.repo.activities.feed.AbstractFeedGenerator] Exception during generation of feeds
com.ibatis.common.jdbc.exception.NestedSQLException:  
— The error occurred in alfresco/ibatis/#resource.dialect#/activities-common-SqlMap.xml. 
— The error occurred while executing query. 
— Check the        select max(sequence_id) as maxId       from alf_activity_post       where status = 'POSTED'    . 
— Check the SQL Statement (preparation failed). 
— Cause: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:201)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryForObject(MappedStatement.java:120)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForObject(SqlMapExecutorDelegate.java:518)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForObject(SqlMapExecutorDelegate.java:493)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForObject(SqlMapSessionImpl.java:106)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForObject(SqlMapSessionImpl.java:110)
   at com.ibatis.sqlmap.engine.impl.SqlMapClientImpl.queryForObject(SqlMapClientImpl.java:86)
   at org.alfresco.repo.domain.activities.ibatis.ActivityPostDAOImpl.getMaxActivitySeq(ActivityPostDAOImpl.java:53)
   at org.alfresco.repo.activities.feed.local.LocalFeedGenerator.generate(LocalFeedGenerator.java:59)
   at org.alfresco.repo.activities.feed.AbstractFeedGenerator.execute(AbstractFeedGenerator.java:137)
   at org.alfresco.repo.activities.feed.FeedGeneratorJob.execute(FeedGeneratorJob.java:50)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at sun.reflect.GeneratedMethodAccessor427.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.util.AutoCommitInterceptor.invoke(AutoCommitInterceptor.java:35)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy79.getConnection(Unknown Source)
   at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(DataSourceUtils.java:113)
   at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:213)
   at $Proxy198.prepareStatement(Unknown Source)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.prepareStatement(SqlExecutor.java:541)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.executeQuery(SqlExecutor.java:219)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.sqlExecuteQuery(MappedStatement.java:221)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:189)
   … 12 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 43 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 44 more
13:46:20,068 ERROR [org.alfresco.repo.activities.post.lookup.PostLookup] Exception during select of posts
com.ibatis.common.jdbc.exception.NestedSQLException:  
— The error occurred in alfresco/ibatis/#resource.dialect#/activities-common-SqlMap.xml. 
— The error occurred while executing query. 
— Check the               select           sequence_id as id,          activity_data as activityData,          activity_type as activityType,          post_user_id as userId,          post_date as postDate,          job_task_node as jobTaskNode,          site_network as siteNetwork,          app_tool as appTool,          status as status       from           alf_activity_post       where           status = ?           . 
— Check the SQL Statement (preparation failed). 
— Cause: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:201)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryForList(MappedStatement.java:139)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForList(SqlMapExecutorDelegate.java:567)
   at com.ibatis.sqlmap.engine.impl.SqlMapExecutorDelegate.queryForList(SqlMapExecutorDelegate.java:541)
   at com.ibatis.sqlmap.engine.impl.SqlMapSessionImpl.queryForList(SqlMapSessionImpl.java:118)
   at com.ibatis.sqlmap.engine.impl.SqlMapClientImpl.queryForList(SqlMapClientImpl.java:94)
   at org.alfresco.repo.domain.activities.ibatis.ActivityPostDAOImpl.selectPosts(ActivityPostDAOImpl.java:43)
   at org.alfresco.repo.activities.post.lookup.PostLookup.execute(PostLookup.java:116)
   at org.alfresco.repo.activities.post.lookup.PostLookupJob.execute(PostLookupJob.java:50)
   at org.quartz.core.JobRunShell.run(JobRunShell.java:202)
   at org.quartz.simpl.SimpleThreadPool$WorkerThread.run(SimpleThreadPool.java:529)
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor324.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2120)
   at com.mysql.jdbc.ConnectionImpl.<init>(ConnectionImpl.java:723)
   at com.mysql.jdbc.JDBC4Connection.<init>(JDBC4Connection.java:46)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method)
   at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.ConnectionImpl.getInstance(ConnectionImpl.java:302)
   at com.mysql.jdbc.NonRegisteringDriver.connect(NonRegisteringDriver.java:282)
   at org.apache.commons.dbcp.DriverConnectionFactory.createConnection(DriverConnectionFactory.java:38)
   at org.apache.commons.dbcp.PoolableConnectionFactory.makeObject(PoolableConnectionFactory.java:294)
   at org.apache.commons.pool.impl.GenericObjectPool.borrowObject(GenericObjectPool.java:974)
   at org.apache.commons.dbcp.PoolingDataSource.getConnection(PoolingDataSource.java:96)
   at org.apache.commons.dbcp.BasicDataSource.getConnection(BasicDataSource.java:880)
   at sun.reflect.GeneratedMethodAccessor427.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
   at java.lang.reflect.Method.invoke(Method.java:597)
   at org.springframework.aop.support.AopUtils.invokeJoinpointUsingReflection(AopUtils.java:307)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.invokeJoinpoint(ReflectiveMethodInvocation.java:183)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:150)
   at org.alfresco.util.AutoCommitInterceptor.invoke(AutoCommitInterceptor.java:35)
   at org.springframework.aop.framework.ReflectiveMethodInvocation.proceed(ReflectiveMethodInvocation.java:172)
   at org.springframework.aop.framework.JdkDynamicAopProxy.invoke(JdkDynamicAopProxy.java:202)
   at $Proxy79.getConnection(Unknown Source)
   at org.springframework.jdbc.datasource.DataSourceUtils.doGetConnection(DataSourceUtils.java:113)
   at org.springframework.jdbc.datasource.TransactionAwareDataSourceProxy$TransactionAwareInvocationHandler.invoke(TransactionAwareDataSourceProxy.java:213)
   at $Proxy198.prepareStatement(Unknown Source)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.prepareStatement(SqlExecutor.java:541)
   at com.ibatis.sqlmap.engine.execution.SqlExecutor.executeQuery(SqlExecutor.java:219)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.sqlExecuteQuery(MappedStatement.java:221)
   at com.ibatis.sqlmap.engine.mapping.statement.MappedStatement.executeQueryWithCallback(MappedStatement.java:189)
   … 10 more
Caused by: com.mysql.jdbc.exceptions.jdbc4.CommunicationsException: Communications link failure

Last packet sent to the server was 0 ms ago.
   at sun.reflect.GeneratedConstructorAccessor324.newInstance(Unknown Source)
   at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27)
   at java.lang.reflect.Constructor.newInstance(Constructor.java:513)
   at com.mysql.jdbc.Util.handleNewInstance(Util.java:406)
   at com.mysql.jdbc.SQLError.createCommunicationsException(SQLError.java:1074)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:335)
   at com.mysql.jdbc.ConnectionImpl.createNewIO(ConnectionImpl.java:2043)
   … 41 more
Caused by: java.net.ConnectException: Connection refused
   at java.net.PlainSocketImpl.socketConnect(Native Method)
   at java.net.PlainSocketImpl.doConnect(PlainSocketImpl.java:333)
   at java.net.PlainSocketImpl.connectToAddress(PlainSocketImpl.java:195)
   at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:182)
   at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366)
   at java.net.Socket.connect(Socket.java:529)
   at java.net.Socket.connect(Socket.java:478)
   at java.net.Socket.<init>(Socket.java:375)
   at java.net.Socket.<init>(Socket.java:218)
   at com.mysql.jdbc.StandardSocketFactory.connect(StandardSocketFactory.java:253)
   at com.mysql.jdbc.MysqlIO.<init>(MysqlIO.java:284)
   … 42 more
13:47:20,208 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/repository.properties]
13:47:20,221 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/domain/transaction.properties]
13:47:20,222 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from file [/opt/alfresco/tomcat/webapps/alfresco/WEB-INF/classes/alfresco/module/org_alfresco_module_dod5015/alfresco-global.properties]
13:47:20,223 INFO  [org.alfresco.config.JndiPropertiesFactoryBean] Loading properties file from URL [file:/opt/alfresco/tomcat/shared/classes/alfresco-global.properties]
13:47:20,361 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:47:44,100 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor Repository Template Processor for extension ftl
13:47:44,103 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor Repository Script Processor for extension js
13:47:51,477 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.MySQLInnoDBDialect.
13:47:53,443 INFO  [org.alfresco.repo.domain.schema.SchemaBootstrap] No changes were made to the schema.
13:47:54,199 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'sysAdmin' subsystem, ID: [sysAdmin, default]
13:47:54,258 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:47:54,271 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'sysAdmin' subsystem, ID: [sysAdmin, default] complete
13:47:56,154 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'thirdparty' subsystem, ID: [thirdparty, default]
13:47:56,174 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:47:56,979 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'thirdparty' subsystem, ID: [thirdparty, default] complete
13:47:56,979 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'OOoDirect' subsystem, ID: [OOoDirect, default]
13:47:57,037 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:47:57,999 WARN  [org.alfresco.util.OpenOfficeConnectionTester] An initial OpenOffice connection could not be established.
13:47:58,019 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'OOoDirect' subsystem, ID: [OOoDirect, default] complete
13:47:59,383 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent] Index recovery started: 1,071 transactions.
13:47:59,675 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    10 % complete.
13:47:59,704 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    20 % complete.
13:47:59,705 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    30 % complete.
13:47:59,706 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    40 % complete.
13:47:59,706 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    50 % complete.
13:47:59,707 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    60 % complete.
13:47:59,707 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    70 % complete.
13:47:59,707 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    80 % complete.
13:47:59,708 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    90 % complete.
13:48:18,008 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent]    100 % complete.
13:48:19,369 INFO  [org.alfresco.repo.node.index.FullIndexRecoveryComponent] Index recovery completed.
13:48:19,390 INFO  [org.alfresco.repo.node.index.AVMFullIndexRecoveryComponent] Rebuilding indexes for 1 AVM Stores
13:48:19,391 INFO  [org.alfresco.repo.node.index.AVMFullIndexRecoveryComponent]     Rebuilding index for sitestore
13:48:19,451 INFO  [org.alfresco.repo.node.index.AVMFullIndexRecoveryComponent]         Rebuilding index for snapshots 0 to 1
13:48:19,625 INFO  [org.alfresco.repo.node.index.AVMFullIndexRecoveryComponent]   Reindex   100% complete
13:48:19,625 INFO  [org.alfresco.repo.node.index.AVMFullIndexRecoveryComponent] Finished rebuilding indexes for AVM Stores
13:48:19,986 INFO  [org.alfresco.repo.admin.ConfigurationChecker] The Alfresco root data directory ('dir.root') is: /var/data/alf_data
13:48:20,009 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] Checking for patches to apply …
13:48:20,397 INFO  [org.alfresco.repo.admin.patch.PatchExecuter] No patches were required.
13:48:20,494 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Found 3 module(s).
13:48:20,612 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org_alfresco_module_dod5015' version 1.0.
13:48:20,963 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org.alfresco.module.vti' version 1.2.
13:48:21,048 INFO  [org.alfresco.repo.module.ModuleServiceImpl] Starting module 'org_alfresco_module_dod5015_share' version 1.0.
13:48:21,156 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'fileServers' subsystem, ID: [fileServers, default]
13:48:21,185 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:21,587 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1]
13:48:21,609 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:21,800 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'Authentication' subsystem, ID: [Authentication, managed, alfrescoNtlm1] complete
13:48:21,830 ERROR [org.alfresco.fileserver] Failed to get local domain/workgroup name, using default of WORKGROUP
13:48:21,831 ERROR [org.alfresco.fileserver] (This may be due to firewall settings or incorrect <broadcast> setting)
13:48:21,983 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'fileServers' subsystem, ID: [fileServers, default] complete
13:48:21,984 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'imap' subsystem, ID: [imap, default]
13:48:22,006 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:22,107 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'imap' subsystem, ID: [imap, default] complete
13:48:22,107 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'email' subsystem, ID: [email, outbound]
13:48:22,125 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:22,256 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'email' subsystem, ID: [email, outbound] complete
13:48:22,256 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'email' subsystem, ID: [email, inbound]
13:48:22,276 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:22,349 WARN  [org.springframework.beans.GenericTypeAwarePropertyDescriptor] Invalid JavaBean property 'blockedSenders' being accessed! Ambiguous write methods found next to actually used [public void org.alfresco.email.server.EmailServer.setBlockedSenders(java.util.List)]: [public void org.alfresco.email.server.EmailServer.setBlockedSenders(java.lang.String)]
13:48:22,349 WARN  [org.springframework.beans.GenericTypeAwarePropertyDescriptor] Invalid JavaBean property 'allowedSenders' being accessed! Ambiguous write methods found next to actually used [public void org.alfresco.email.server.EmailServer.setAllowedSenders(java.util.List)]: [public void org.alfresco.email.server.EmailServer.setAllowedSenders(java.lang.String)]
13:48:22,400 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'email' subsystem, ID: [email, inbound] complete
13:48:22,401 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] Enabled - calculate missing user usages …
13:48:22,413 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] Found 0 users to recalculate
13:48:22,413 INFO  [org.alfresco.repo.usage.UserUsageTrackingComponent] … calculated missing usages for 0 users
13:48:22,414 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'Synchronization' subsystem, ID: [Synchronization, default]
13:48:22,463 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:22,603 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'Synchronization' subsystem, ID: [Synchronization, default] complete
13:48:22,916 INFO  [org.alfresco.service.descriptor.DescriptorService] Alfresco JVM - v1.6.0_20-b02; maximum heap size 486.438MB
13:48:22,917 WARN  [org.alfresco.service.descriptor.DescriptorService] Alfresco JVM - WARNING - maximum heap size 486.438MB is less than recommended 512MB
13:48:22,917 INFO  [org.alfresco.service.descriptor.DescriptorService] Alfresco started (Community): Current version 3.3.0 (2765) schema 4009 - Originally installed version 3.0.0 (b 1164) schema 131
13:48:23,138 INFO  [org.alfresco.util.OpenOfficeConnectionTester] The OpenOffice connection was re-established.
13:48:27,303 INFO  [org.alfresco.module.vti.VtiServer] Vti server started successfully on port: 7070
13:48:45,517 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 407 Web Scripts (+0 failed), 652 URLs
13:48:45,518 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 2 Package Description Documents (+0 failed)
13:48:45,518 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 1 Schema Description Documents (+0 failed)
13:48:45,520 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Repository Web Script Container (in 17493.395ms)
13:48:45,521 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:48:45,523 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
13:48:45,843 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Starting 'wcm_deployment_receiver' subsystem, ID: [wcm_deployment_receiver, default]
13:48:45,910 INFO  [org.alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties]
13:48:46,046 INFO  [org.alfresco.repo.management.subsystems.ChildApplicationContextFactory] Startup of 'wcm_deployment_receiver' subsystem, ID: [wcm_deployment_receiver, default] complete
13:48:53,070 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 51 Web Scripts (+0 failed), 58 URLs
13:48:53,072 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 8 Package Description Documents (+0 failed)
13:48:53,072 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 0 Schema Description Documents (+0 failed)
13:48:53,088 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Spring Surf Container Web Script Container (in 673.89624ms)
13:48:53,230 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:48:53,389 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
13:48:53,412 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:48:53,418 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
13:48:53,441 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:48:53,447 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
13:49:00,590 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 225 Web Scripts (+0 failed), 232 URLs
13:49:00,592 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 8 Package Description Documents (+0 failed)
13:49:00,592 INFO  [org.springframework.extensions.webscripts.DeclarativeRegistry] Registered 0 Schema Description Documents (+0 failed)
13:49:00,647 INFO  [org.springframework.extensions.webscripts.AbstractRuntimeContainer] Initialised Spring Surf Container Web Script Container (in 2158.9338ms)
13:49:00,900 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:49:01,055 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
13:49:01,128 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:49:01,133 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js
13:49:01,211 INFO  [org.springframework.extensions.webscripts.TemplateProcessorRegistry] Registered template processor freemarker for extension ftl
13:49:01,216 INFO  [org.springframework.extensions.webscripts.ScriptProcessorRegistry] Registered script processor javascript for extension js

[gcousins]

While searching the forums for an answer I stumbled across "Permissions in alfresco vs share" In Alfresco Share Development (http://forums.alfresco.com/en/viewtopic.php?f=48&t=23905&p=81840&hilit=share+manager#p81840)

I found a script in there to update the manager's "manager" status:

var site = siteService.getSite("sitename");
site.setMembership("username", "SiteManager")‍‍

I called this change manager.js and uploaded it to the scripts directory in Data in Explorer.

I then ran the script and now the user is back as Site Manager with all the buttons on the site. The Dashboard loaded but was missing the usual dashlets so I removed all the dashlets, saved, back in again, added a dashlet, saved, in again, added another one and so on until they were all there.

One issue remains: on the persons main dashboard, the Tasks dashlet shows 4 tasks. The tasks cannot be actioned or removed, it throws a fail error. I can live with this for the moment but it would be nice to get rid of these redundant tasks.

[mikeh]

You can use the Workflow Console to remove any unwanted tasks. http://wiki.alfresco.com/wiki/Workflow_Console

Thanks,
Mike