Alfresco not coming back after some minor changes

[davy_vdm]

We've changed some network settings on the server, and after a reboot, Alfresco doesn't come back up in a decent way.

We've been running Alfresco for over a year on this server without problems (its Debian), and now after hours of searching the best thing to come up with is the error below, any help (commercial or community) is very welcome:

catalina.sh run gives me this:

Aug 15, 2008 4:45:01 PM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/5.5.23
Aug 15, 2008 4:45:01 PM org.apache.catalina.core.StandardHost start
INFO: XML validation disabled
Aug 15, 2008 4:45:01 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive alfresco.war
16:45:13,474 WARN  [remoting.rmi.RmiRegistryFactoryBean] Could not detect RMI registry - creating new one
16:45:13,850 ERROR [web.context.ContextLoader] Context initialization failed
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dictionaryRepositoryBootstrap' defined in class path resource [alfresco/core-services-context.xml]: Invocation of init method failed; nested exception is org.alfresco.error.AlfrescoRuntimeException: Failure during rollback: org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap$1@a75004
Caused by:
org.alfresco.error.AlfrescoRuntimeException: Failure during rollback: org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap$1@a75004
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:281)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:155)
   at org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap.bootstrap(DictionaryRepositoryBootstrap.java:134)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1160)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1122)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1085)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:429)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:250)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:141)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:247)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:161)
   at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:273)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:346)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:156)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.lang.IllegalStateException: No user transaction is active
   at org.alfresco.util.transaction.SpringAwareUserTransaction.rollback(SpringAwareUserTransaction.java:479)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:276)
   … 44 more
16:45:13,853 ERROR [[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dictionaryRepositoryBootstrap' defined in class path resource [alfresco/core-services-context.xml]: Invocation of init method failed; nested exception is org.alfresco.error.AlfrescoRuntimeException: Failure during rollback: org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap$1@a75004
Caused by:
org.alfresco.error.AlfrescoRuntimeException: Failure during rollback: org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap$1@a75004
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:281)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:155)
   at org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap.bootstrap(DictionaryRepositoryBootstrap.java:134)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1160)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1122)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1085)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:429)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:250)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:141)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:247)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:161)
   at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:273)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:346)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:156)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.lang.IllegalStateException: No user transaction is active
   at org.alfresco.util.transaction.SpringAwareUserTransaction.rollback(SpringAwareUserTransaction.java:479)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:276)
   … 44 more
16:45:13,855 ERROR [[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.alfresco.web.app.ContextListener
org.springframework.beans.factory.BeanCreationException: Error creating bean with name 'dictionaryRepositoryBootstrap' defined in class path resource [alfresco/core-services-context.xml]: Invocation of init method failed; nested exception is org.alfresco.error.AlfrescoRuntimeException: Failure during rollback: org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap$1@a75004
Caused by:
org.alfresco.error.AlfrescoRuntimeException: Failure during rollback: org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap$1@a75004
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:281)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:155)
   at org.alfresco.repo.dictionary.DictionaryRepositoryBootstrap.bootstrap(DictionaryRepositoryBootstrap.java:134)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeCustomInitMethod(AbstractAutowireCapableBeanFactory.java:1160)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.invokeInitMethods(AbstractAutowireCapableBeanFactory.java:1122)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.initializeBean(AbstractAutowireCapableBeanFactory.java:1085)
   at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:429)
   at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:250)
   at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:141)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:247)
   at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:161)
   at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:273)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:346)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:156)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Caused by: java.lang.IllegalStateException: No user transaction is active
   at org.alfresco.util.transaction.SpringAwareUserTransaction.rollback(SpringAwareUserTransaction.java:479)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:276)
   … 44 more
Aug 15, 2008 4:45:13 PM org.apache.catalina.core.StandardContext start
SEVERE: Error listenerStart
Aug 15, 2008 4:45:13 PM org.apache.catalina.core.StandardContext start
SEVERE: Context [/alfresco] startup failed due to previous errors
Aug 15, 2008 4:45:15 PM org.apache.coyote.http11.Http11BaseProtocol start
INFO: Starting Coyote HTTP/1.1 on http-8080
Aug 15, 2008 4:45:15 PM org.apache.catalina.storeconfig.StoreLoader load
INFO: Find registry server-registry.xml at classpath resource
Aug 15, 2008 4:45:15 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 14276 ms

Another log catalina.out gives me:

Aug 15, 2008 4:54:53 PM org.apache.coyote.http11.Http11BaseProtocol init
INFO: Initializing Coyote HTTP/1.1 on http-8080
Aug 15, 2008 4:54:53 PM org.apache.catalina.startup.Catalina load
INFO: Initialization processed in 761 ms
Aug 15, 2008 4:54:53 PM org.apache.catalina.core.StandardService start
INFO: Starting service Catalina
Aug 15, 2008 4:54:53 PM org.apache.catalina.core.StandardEngine start
INFO: Starting Servlet Engine: Apache Tomcat/5.5.23
Aug 15, 2008 4:54:53 PM org.apache.catalina.core.StandardHost start
INFO: XML validation disabled
Aug 15, 2008 4:54:53 PM org.apache.catalina.startup.HostConfig deployWAR
INFO: Deploying web application archive alfresco.war
16:55:16,950 WARN  [remoting.rmi.RmiRegistryFactoryBean] Could not detect RMI registry - creating new one
16:55:18,824 WARN  [alfresco.util.OpenOfficeConnectionTester] A connection to OpenOffice could not be established.
16:55:21,064 INFO  [domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.HSQLDialect.
16:55:21,068 INFO  [domain.schema.SchemaBootstrap] Alfresco is using the HSQL default database. Please only use this while evaluating Alfresco, it is NOT recommended for production or deployment!
16:55:21,699 INFO  [domain.schema.SchemaBootstrap] No changes were made to the schema.
16:55:24,350 INFO  [repo.admin.ConfigurationChecker] The Alfresco root data directory ('dir.root') is: /opt/alfresco/alf_data
16:55:24,410 ERROR [web.context.ContextLoader] Context initialization failed
org.alfresco.error.AlfrescoRuntimeException: The store 'archive://SpacesStore' has a duplicate root node entry.
   at org.alfresco.repo.admin.ConfigurationChecker.check(ConfigurationChecker.java:268)
   at org.alfresco.repo.admin.ConfigurationChecker.access$000(ConfigurationChecker.java:72)
   at org.alfresco.repo.admin.ConfigurationChecker$1.execute(ConfigurationChecker.java:178)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:225)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:155)
   at org.alfresco.repo.admin.ConfigurationChecker.onBootstrap(ConfigurationChecker.java:182)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:241)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:349)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:156)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
16:55:24,412 ERROR [[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.springframework.web.context.ContextLoaderListener
org.alfresco.error.AlfrescoRuntimeException: The store 'archive://SpacesStore' has a duplicate root node entry.
   at org.alfresco.repo.admin.ConfigurationChecker.check(ConfigurationChecker.java:268)
   at org.alfresco.repo.admin.ConfigurationChecker.access$000(ConfigurationChecker.java:72)
   at org.alfresco.repo.admin.ConfigurationChecker$1.execute(ConfigurationChecker.java:178)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:225)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:155)
   at org.alfresco.repo.admin.ConfigurationChecker.onBootstrap(ConfigurationChecker.java:182)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:241)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:349)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:156)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
16:55:24,414 ERROR [[Catalina].[localhost].[/alfresco]] Exception sending context initialized event to listener instance of class org.alfresco.web.app.ContextListener
org.alfresco.error.AlfrescoRuntimeException: The store 'archive://SpacesStore' has a duplicate root node entry.
   at org.alfresco.repo.admin.ConfigurationChecker.check(ConfigurationChecker.java:268)
   at org.alfresco.repo.admin.ConfigurationChecker.access$000(ConfigurationChecker.java:72)
   at org.alfresco.repo.admin.ConfigurationChecker$1.execute(ConfigurationChecker.java:178)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:225)
   at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:155)
   at org.alfresco.repo.admin.ConfigurationChecker.onBootstrap(ConfigurationChecker.java:182)
   at org.alfresco.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:62)
   at org.springframework.context.event.SimpleApplicationEventMulticaster$1.run(SimpleApplicationEventMulticaster.java:77)
   at org.springframework.core.task.SyncTaskExecutor.execute(SyncTaskExecutor.java:49)
   at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:75)
   at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:241)
   at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:349)
   at org.springframework.web.context.support.AbstractRefreshableWebApplicationContext.refresh(AbstractRefreshableWebApplicationContext.java:156)
   at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:246)
   at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:184)
   at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:49)
   at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:3764)
   at org.apache.catalina.core.StandardContext.start(StandardContext.java:4216)
   at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:760)
   at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:740)
   at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:544)
   at org.apache.catalina.startup.HostConfig.deployWAR(HostConfig.java:825)
   at org.apache.catalina.startup.HostConfig.deployWARs(HostConfig.java:714)
   at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:490)
   at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1138)
   at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:311)
   at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:120)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1022)
   at org.apache.catalina.core.StandardHost.start(StandardHost.java:736)
   at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1014)
   at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:443)
   at org.apache.catalina.core.StandardService.start(StandardService.java:448)
   at org.apache.catalina.core.StandardServer.start(StandardServer.java:700)
   at org.apache.catalina.startup.Catalina.start(Catalina.java:552)
   at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
   at sun.reflect.NativeMethodAccessorImpl.invoke(Unknown Source)
   at sun.reflect.DelegatingMethodAccessorImpl.invoke(Unknown Source)
   at java.lang.reflect.Method.invoke(Unknown Source)
   at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:295)
   at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:433)
Aug 15, 2008 4:55:24 PM org.apache.catalina.core.StandardContext start
SEVERE: Error listenerStart
Aug 15, 2008 4:55:24 PM org.apache.catalina.core.StandardContext start
SEVERE: Context [/alfresco] startup failed due to previous errors
Aug 15, 2008 4:55:26 PM org.apache.coyote.http11.Http11BaseProtocol start
INFO: Starting Coyote HTTP/1.1 on http-8080
Aug 15, 2008 4:55:26 PM org.apache.catalina.storeconfig.StoreLoader load
INFO: Find registry server-registry.xml at classpath resource
Exception in thread "HSQLDB Timer @8f3eac" java.lang.NullPointerException
   at org.hsqldb.lib.HsqlTimer.nextTask(Unknown Source)
   at org.hsqldb.lib.HsqlTimer$TaskRunner.run(Unknown Source)
   at java.lang.Thread.run(Unknown Source)
Aug 15, 2008 4:55:26 PM org.apache.catalina.startup.Catalina start
INFO: Server startup in 33181 ms

[pmonks]

It appears that the Alfresco database is corrupted - do you have a recent backup available that you can restore (see http://wiki.alfresco.com/wiki/Backup_and_Restore for details)?  Before restoring I'd suggest taking a full backup of the current repository first, just in case your backup is also corrupted (backing up the current repository won't necessarily make it easier to get back up and running, but at least it will help to minimise data loss).

Now the bigger question here is how the database became corrupted, and although that's normally quite rare (ignoring outside influences of course!), the following log file entry points to the likely culprit:

16:55:21,068 INFO [domain.schema.SchemaBootstrap] Alfresco is using the HSQL default database. Please only use this while evaluating Alfresco, it is NOT recommended for production or deployment!

One of the reasons HSQLDB is not recommended for use in production is it's tendency to corrupt itself and/or Alfresco.  While HSQLDB does its best to support transactions with full ACID characteristics, there are cases where it's unable to do so, virtually guaranteeing corruption.

Cheers,
Peter