I’m running into a blocker issue, Can someone reply to this earliest?
I have a ubuntu system where alfresco enterprise edition3.4.5 was already installed.
I reinstalled Mysql5.5 as it was corrupt,din’t take any back up of db.
Below are the steps followed.
Stopped Mysql Stopped alfresco Deleted all Mysql related installables ( no back up is taken) Installed Mysql5.5 Started Mysql Created alfresco user with necessary permissions Removed contentstore, contentstore.deleted and lucene indexes. Started alfresco but it throws below error. S/W details: ——— x86_64 GNU/Linux Ubuntu Alfresco - 3.4.5 Mysql - 5.5
Is there any initialize script for populating DB and keep in sync with alfresco as DB is a fresh db? (OR) What am I missing something else Error log:
Apr 17, 2015 1:36:18 PM org.apache.catalina.core.AprLifecycleListener init INFO: The APR based Apache Tomcat Native library which allows optimal performance in production environments was not found on the java.library.path: /opt/alfresco-3.4.5/java/jre/lib/amd64/server:/opt/alfresco-3.4.5/java/jre/lib/amd64:/opt/alfresco-3.4.5/java/jre/../lib/amd64:/opt/alfresco-3.4.5/common/lib::/usr/java/packages/lib/amd64:/usr/lib64:/lib64:/lib:/usr/lib Apr 17, 2015 1:36:19 PM org.apache.coyote.http11.Http11Protocol init INFO: Initializing Coyote HTTP/1.1 on http-8180 Apr 17, 2015 1:36:19 PM org.apache.catalina.startup.Catalina load INFO: Initialization processed in 387 ms Apr 17, 2015 1:36:19 PM org.apache.catalina.core.StandardService start INFO: Starting service Catalina Apr 17, 2015 1:36:19 PM org.apache.catalina.core.StandardEngine start INFO: Starting Servlet Engine: Apache Tomcat/6.0.29 Apr 17, 2015 1:36:19 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor ROOT.xml Apr 17, 2015 1:36:19 PM org.apache.catalina.core.StandardContext addApplicationListener INFO: The listener "org.apache.myfaces.webapp.StartupServletContextListener" is already configured for this context. The duplicate definition has been ignored. 13:36:24,311 INFO [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/repository.properties] 13:36:24,313 INFO [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from class path resource [alfresco/domain/transaction.properties] 13:36:24,313 INFO [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from file [/opt/alfresco-3.4.5/tomcat/webapps/ROOT/WEB-INF/classes/alfresco/module/test/alfresco-global.properties] 13:36:24,313 INFO [alfresco.config.JndiPropertiesFactoryBean] Loading properties file from URL [file:/opt/alfresco-3.4.5/tomcat/shared/classes/alfresco-global.properties] 13:36:24,354 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties] 13:36:24,397 INFO [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties] 13:36:24,420 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties] 13:36:24,938 INFO [management.subsystems.ChildApplicationContextFactory] Starting 'sysAdmin' subsystem, ID: [sysAdmin, default] 13:36:24,966 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties] 13:36:24,966 INFO [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties] 13:36:24,967 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties] 13:36:24,973 INFO [management.subsystems.ChildApplicationContextFactory] Startup of 'sysAdmin' subsystem, ID: [sysAdmin, default] complete 13:36:34,161 INFO [extensions.webscripts.TemplateProcessorRegistry] Registered template processor Repository Template Processor for extension ftl 13:36:34,162 INFO [extensions.webscripts.ScriptProcessorRegistry] Registered script processor Repository Script Processor for extension js java.net.UnknownHostException: basename at java.net.PlainSocketImpl.connect(PlainSocketImpl.java:177) at java.net.SocksSocketImpl.connect(SocksSocketImpl.java:366) at java.net.Socket.connect(Socket.java:529) at java.net.Socket.connect(Socket.java:478) at sun.net.NetworkClient.doConnect(NetworkClient.java:163) at sun.net.NetworkClient.openServer(NetworkClient.java:118) at sun.net.ftp.FtpClient.openServer(FtpClient.java:488) at sun.net.ftp.FtpClient.openServer(FtpClient.java:475) at sun.net.www.protocol.ftp.FtpURLConnection.connect(FtpURLConnection.java:270) at sun.net.www.protocol.ftp.FtpURLConnection.getInputStream(FtpURLConnection.java:352) at java.net.URL.openStream(URL.java:1010) at org.apache.xml.resolver.Catalog.parseCatalogFile(Unknown Source) at org.apache.xml.resolver.Catalog.parsePendingCatalogs(Unknown Source) at org.apache.xml.resolver.Catalog.parseCatalog(Unknown Source) at org.apache.xml.resolver.Catalog.loadSystemCatalogs(Unknown Source) at org.apache.xml.resolver.CatalogManager.getPrivateCatalog(Unknown Source) at org.apache.xml.resolver.CatalogManager.getCatalog(Unknown Source) at org.apache.xml.resolver.tools.CatalogResolver.initializeCatalogs(Unknown Source) at org.apache.xml.resolver.tools.CatalogResolver.<init>(Unknown Source) at org.apache.cxf.catalog.OASISCatalogManager.getResolver(OASISCatalogManager.java:69) at org.apache.cxf.catalog.OASISCatalogManager.<init>(OASISCatalogManager.java:58) at sun.reflect.NativeConstructorAccessorImpl.newInstance0(Native Method) at sun.reflect.NativeConstructorAccessorImpl.newInstance(NativeConstructorAccessorImpl.java:39) at sun.reflect.DelegatingConstructorAccessorImpl.newInstance(DelegatingConstructorAccessorImpl.java:27) at java.lang.reflect.Constructor.newInstance(Constructor.java:513) at org.springframework.beans.BeanUtils.instantiateClass(BeanUtils.java:126) at org.springframework.beans.factory.support.SimpleInstantiationStrategy.instantiate(SimpleInstantiationStrategy.java:72) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.instantiateBean(AbstractAutowireCapableBeanFactory.java:938) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBeanInstance(AbstractAutowireCapableBeanFactory.java:890) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.doCreateBean(AbstractAutowireCapableBeanFactory.java:479) at org.springframework.beans.factory.support.AbstractAutowireCapableBeanFactory.createBean(AbstractAutowireCapableBeanFactory.java:450) at org.springframework.beans.factory.support.AbstractBeanFactory$1.getObject(AbstractBeanFactory.java:290) at org.springframework.beans.factory.support.DefaultSingletonBeanRegistry.getSingleton(DefaultSingletonBeanRegistry.java:222) at org.springframework.beans.factory.support.AbstractBeanFactory.doGetBean(AbstractBeanFactory.java:287) at org.springframework.beans.factory.support.AbstractBeanFactory.getBean(AbstractBeanFactory.java:189) at org.springframework.beans.factory.support.DefaultListableBeanFactory.preInstantiateSingletons(DefaultListableBeanFactory.java:557) at org.springframework.context.support.AbstractApplicationContext.finishBeanFactoryInitialization(AbstractApplicationContext.java:842) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:416) at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:261) at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:192) at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47) at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:63) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4135) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4630) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:546) at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637) at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321) at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053) at org.apache.catalina.core.StandardHost.start(StandardHost.java:785) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:445) at org.apache.catalina.core.StandardService.start(StandardService.java:519) at org.apache.catalina.core.StandardServer.start(StandardServer.java:710) at org.apache.catalina.startup.Catalina.start(Catalina.java:581) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414) 13:36:39,261 INFO [domain.schema.SchemaBootstrap] Schema managed by database dialect org.hibernate.dialect.MySQLInnoDBDialect. 13:36:39,440 INFO [domain.schema.SchemaBootstrap] No changes were made to the schema. 13:36:40,448 INFO [management.subsystems.ChildApplicationContextFactory] Starting 'thirdparty' subsystem, ID: [thirdparty, default] 13:36:40,459 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties] 13:36:40,459 INFO [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties] 13:36:40,460 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties] 13:36:40,589 INFO [management.subsystems.ChildApplicationContextFactory] Startup of 'thirdparty' subsystem, ID: [thirdparty, default] complete 13:36:40,589 INFO [management.subsystems.ChildApplicationContextFactory] Starting 'OOoDirect' subsystem, ID: [OOoDirect, default] 13:36:40,599 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties] 13:36:40,599 INFO [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties] 13:36:40,599 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties] 13:36:41,037 WARN [alfresco.util.OpenOfficeConnectionTester] An initial OpenOffice connection could not be established. 13:36:41,043 INFO [management.subsystems.ChildApplicationContextFactory] Startup of 'OOoDirect' subsystem, ID: [OOoDirect, default] complete 13:36:41,048 INFO [management.subsystems.ChildApplicationContextFactory] Starting 'OOoJodconverter' subsystem, ID: [OOoJodconverter, default] 13:36:41,095 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/version.properties] 13:36:41,096 INFO [alfresco.config.JndiPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/alfresco-shared.properties] 13:36:41,096 INFO [alfresco.config.FixedPropertyPlaceholderConfigurer] Loading properties file from class path resource [alfresco/domain/cache-strategies.properties] 13:36:41,136 INFO [management.subsystems.ChildApplicationContextFactory] Startup of 'OOoJodconverter' subsystem, ID: [OOoJodconverter, default] complete 13:36:41,292 WARN [node.index.FullIndexRecoveryComponent] The indexes are not synchronized with the database. 13:36:41,341 WARN [node.index.AVMFullIndexRecoveryComponent] Index for avm store sitestore is out of date 13:36:41,506 WARN [service.descriptor.DescriptorService] Alfresco license: Failed to verify license - Invalid License! 13:36:41,506 WARN [service.descriptor.DescriptorService] Alfresco license: Restricted Alfresco Repository to read-only capability 13:36:41,535 INFO [repo.admin.ConfigurationChecker] The Alfresco root data directory ('dir.root') is: /opt/alfresco-3.4.5/alf_data 13:36:41,606 ERROR [repo.admin.ConfigurationChecker] CONTENT INTEGRITY ERROR: Indexes not found for 7 stores. 13:36:41,606 INFO [repo.admin.ConfigurationChecker] You may set 'index.recovery.mode=FULL' if you need to rebuild the indexes. 13:36:41,606 ERROR [repo.admin.ConfigurationChecker] CONTENT INTEGRITY ERROR: System content not found in content store. 13:36:41,607 ERROR [repo.admin.ConfigurationChecker] Ensure that the 'dir.root' property is pointing to the correct data location. 13:36:41,609 ERROR [web.context.ContextLoader] Context initialization failed org.alfresco.error.AlfrescoRuntimeException: 03170000 Ensure that the 'dir.root' property is pointing to the correct data location. at org.alfresco.repo.admin.ConfigurationChecker.check(ConfigurationChecker.java:332) at org.alfresco.repo.admin.ConfigurationChecker.access$000(ConfigurationChecker.java:68) at org.alfresco.repo.admin.ConfigurationChecker$1.execute(ConfigurationChecker.java:180) at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:381) at org.alfresco.repo.transaction.RetryingTransactionHelper.doInTransaction(RetryingTransactionHelper.java:272) at org.alfresco.repo.admin.ConfigurationChecker.onBootstrap(ConfigurationChecker.java:184) at org.springframework.extensions.surf.util.AbstractLifecycleBean.onApplicationEvent(AbstractLifecycleBean.java:56) at org.springframework.context.event.SimpleApplicationEventMulticaster.multicastEvent(SimpleApplicationEventMulticaster.java:97) at org.alfresco.repo.management.SafeApplicationEventMulticaster.multicastEvent(SafeApplicationEventMulticaster.java:78) at org.springframework.context.support.AbstractApplicationContext.publishEvent(AbstractApplicationContext.java:294) at org.springframework.context.support.AbstractApplicationContext.finishRefresh(AbstractApplicationContext.java:858) at org.springframework.context.support.AbstractApplicationContext.refresh(AbstractApplicationContext.java:419) at org.springframework.web.context.ContextLoader.createWebApplicationContext(ContextLoader.java:261) at org.springframework.web.context.ContextLoader.initWebApplicationContext(ContextLoader.java:192) at org.springframework.web.context.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:47) at org.alfresco.web.app.ContextLoaderListener.contextInitialized(ContextLoaderListener.java:63) at org.apache.catalina.core.StandardContext.listenerStart(StandardContext.java:4135) at org.apache.catalina.core.StandardContext.start(StandardContext.java:4630) at org.apache.catalina.core.ContainerBase.addChildInternal(ContainerBase.java:791) at org.apache.catalina.core.ContainerBase.addChild(ContainerBase.java:771) at org.apache.catalina.core.StandardHost.addChild(StandardHost.java:546) at org.apache.catalina.startup.HostConfig.deployDescriptor(HostConfig.java:637) at org.apache.catalina.startup.HostConfig.deployDescriptors(HostConfig.java:563) at org.apache.catalina.startup.HostConfig.deployApps(HostConfig.java:498) at org.apache.catalina.startup.HostConfig.start(HostConfig.java:1277) at org.apache.catalina.startup.HostConfig.lifecycleEvent(HostConfig.java:321) at org.apache.catalina.util.LifecycleSupport.fireLifecycleEvent(LifecycleSupport.java:119) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1053) at org.apache.catalina.core.StandardHost.start(StandardHost.java:785) at org.apache.catalina.core.ContainerBase.start(ContainerBase.java:1045) at org.apache.catalina.core.StandardEngine.start(StandardEngine.java:445) at org.apache.catalina.core.StandardService.start(StandardService.java:519) at org.apache.catalina.core.StandardServer.start(StandardServer.java:710) at org.apache.catalina.startup.Catalina.start(Catalina.java:581) at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method) at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39) at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25) at java.lang.reflect.Method.invoke(Method.java:597) at org.apache.catalina.startup.Bootstrap.start(Bootstrap.java:289) at org.apache.catalina.startup.Bootstrap.main(Bootstrap.java:414) Apr 17, 2015 1:36:41 PM org.apache.catalina.core.StandardContext start SEVERE: Error listenerStart Apr 17, 2015 1:36:41 PM org.apache.catalina.core.StandardContext start SEVERE: Context [] startup failed due to previous errors Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-1] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-2] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-3] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-4] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-5] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-6] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-7] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-8] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-9] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_Worker-10] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [Thread-12] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [Timer-0] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread1] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread2] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread3] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread4] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread5] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread6] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread7] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread8] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread9] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [indexThread10] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [DefaultScheduler_QuartzSchedulerThread] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [Timer runner-1,<CL-NAME>,BEST02VMW02-3089] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearReferencesThreads SEVERE: The web application [] appears to have started a thread named [TransferQueueBundler,null,null] but has failed to stop it. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [null] (value [com.sun.xml.bind.v2.ClassFactory$1@758d8478]) and a value of type [java.util.WeakHashMap] (value [{class org.alfresco.repo.audit.model._3.PathMap=java.lang.ref.WeakReference@7a2fc0ff, class javax.xml.bind.annotation.W3CDomHandler=java.lang.ref.WeakReference@5527e404, class org.alfresco.repo.audit.model._3.DataGenerator=java.lang.ref.WeakReference@2deaee49, class java.util.ArrayList=java.lang.ref.WeakReference@1ac2122c, class org.alfresco.repo.audit.model._3.DataExtractors=java.lang.ref.WeakReference@3b37146d, class org.alfresco.repo.audit.model._3.Audit=java.lang.ref.WeakReference@1d1e1e7a, class org.alfresco.repo.audit.model._3.GenerateValue=java.lang.ref.WeakReference@2462ea85, class org.alfresco.repo.audit.model._3.DataGenerators=java.lang.ref.WeakReference@5a12d46c, class org.alfresco.repo.audit.model._3.AuditPath=java.lang.ref.WeakReference@a382ca7, class org.alfresco.repo.audit.model._3.DataExtractor=java.lang.ref.WeakReference@6dfb8d2e, class org.alfresco.repo.audit.model._3.PathMappings=java.lang.ref.WeakReference@1df1ff6b, class org.alfresco.repo.audit.model._3.RecordValue=java.lang.ref.WeakReference@7ab7d928, class org.alfresco.repo.audit.model._3.Application=java.lang.ref.WeakReference@3c121009}]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@45daddae]) and a value of type [com.ibatis.sqlmap.engine.mapping.result.ResultObjectFactoryUtil.FactorySettings] (value [com.ibatis.sqlmap.engine.mapping.result.ResultObjectFactoryUtil$FactorySettings@11e86299]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [null] (value [org.alfresco.repo.tagging.TagScopePropertyMethodInterceptor$1@2fa133fe]) and a value of type [java.lang.Boolean] (value [true]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [org.alfresco.repo.security.authentication.AuthenticationUtil.ThreadLocalStack] (value [org.alfresco.repo.security.authentication.AuthenticationUtil$ThreadLocalStack@5c8120]) and a value of type [java.util.Stack] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@39215c0f]) and a value of type [org.alfresco.repo.search.impl.lucene.index.ReferenceCountingReadOnlyIndexReaderFactory.ReferenceCountingReadOnlyIndexReader] (value [org.alfresco.repo.search.impl.lucene.index.ReferenceCountingReadOnlyIndexReaderFactory$ReferenceCountingReadOnlyIndexReader@150e6233]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [null] (value [com.sun.xml.bind.v2.runtime.Coordinator$1@63510d11]) and a value of type [com.sun.xml.bind.v2.runtime.Coordinator[]] (value [[Lcom.sun.xml.bind.v2.runtime.Coordinator;@5e310a07]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [org.alfresco.repo.policy.BaseBehaviour.StackThreadLocal] (value [org.alfresco.repo.policy.BaseBehaviour$StackThreadLocal@658981e0]) and a value of type [java.util.Stack] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@26adcd34]) and a value of type [org.apache.cxf.bus.CXFBusImpl] (value [org.apache.cxf.bus.CXFBusImpl@5c7b24c2]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [org.alfresco.repo.security.authentication.AuthenticationUtil.ThreadLocalStack] (value [org.alfresco.repo.security.authentication.AuthenticationUtil$ThreadLocalStack@18aa6bfd]) and a value of type [java.util.Stack] (value [[]]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. Apr 17, 2015 1:36:41 PM org.apache.catalina.loader.WebappClassLoader clearThreadLocalMap SEVERE: The web application [] created a ThreadLocal with key of type [java.lang.ThreadLocal] (value [java.lang.ThreadLocal@5c97bbb1]) and a value of type [org.alfresco.util.CachingDateFormat] (value [yyyy-MM-dd]) but failed to remove it when the web application was stopped. This is very likely to create a memory leak. log4j:ERROR LogMananger.repositorySelector was null likely due to error in class reloading, using NOPLoggerRepository. Apr 17, 2015 1:36:42 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor host-manager.xml Apr 17, 2015 1:36:42 PM org.apache.catalina.startup.HostConfig deployDescriptor INFO: Deploying configuration descriptor manager.xml Apr 17, 2015 1:36:42 PM org.apache.coyote.http11.Http11Protocol start INFO: Starting Coyote HTTP/1.1 on http-8180 Apr 17, 2015 1:36:42 PM org.apache.jk.common.ChannelSocket init INFO: JK: ajp13 listening on /0.0.0.0:8109 Apr 17, 2015 1:36:42 PM org.apache.jk.server.JkMain start INFO: Jk running ID=0 time=0/14 config=null Apr 17, 2015 1:36:42 PM org.apache.catalina.startup.Catalina start INFO: Server startup in 23674 ms Exception in thread "Timer-0" java.lang.NullPointerException at org.alfresco.util.DynamicallySizedThreadPoolExecutor.execute(DynamicallySizedThreadPoolExecutor.java:88) at org.alfresco.repo.search.impl.lucene.index.IndexInfo$AbstractSchedulable.schedule(IndexInfo.java:3233) at org.alfresco.repo.search.impl.lucene.index.IndexInfo$4.run(IndexInfo.java:797) at java.util.TimerThread.mainLoop(Timer.java:512) at java.util.TimerThread.run(Timer.java:462) Apr 17, 2015 1:38:39 PM org.apache.catalina.loader.WebappClassLoader loadClass INFO: Illegal access: this web application instance has been stopped already. Could not load org.jgroups.util.TimeScheduler2$1. The eventual following stack trace is caused by an error thrown for debugging purposes as well as to attempt to terminate the thread which caused the illegal access, and has no functional impact. java.lang.IllegalStateException at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1531) at org.apache.catalina.loader.WebappClassLoader.loadClass(WebappClassLoader.java:1491) at org.jgroups.util.TimeScheduler2._run(TimeScheduler2.java:294) at org.jgroups.util.TimeScheduler2.run(TimeScheduler2.java:278) at java.lang.Thread.run(Thread.java:662) Exception in thread "Timer runner-1,<CL-NAME>,BEST02VMW02-3089" java.lang.NullPointerException at org.jgroups.logging.Log4JLogImpl.error(Log4JLogImpl.java:64) at org.jgroups.util.TimeScheduler2.run(TimeScheduler2.java:281) at java.lang.Thread.run(Thread.java:662)
Always we need to follow best practice as a backup our content store <data> and SQL script. If we accidently delete something it would help to restore. In your case you removed db without backup. so every sync stuff to contentStore lost. It can't rebuild index without db.