Right… Forgot about that (it's my comment on the other topic, woops). That's why the java-steps in the upgrade-process are introduced. But other than that, the properties are completely unrelated.
The history-level is now stored in the DB, the first time the engine starts on a schema (or upgrades) to prevent changing the history-level and messing up engine assumptions done about history (eg. expecting certain entities to exist when level=full). I thought you were migrating from 5.3 to 5.4, which contains no java-steps, only SQL.
I guess, since you use liquibase, you will have to check all java-steps in the upgrade-process and do that stuff manually…