Hi Cyberjus
We have seen this problem, but tracked it down to memory, and we were seeing messages in /var/log/messages. showing that the java process had to be terminated because of lack of memory. This is more a linux 'feature' rather than alfresco specific, in that linux will save itself, at the expense of terminating any processes causing its memory to run out. We also had some success using the vmswapiness parameter, which helped squeeze a little more from the machine.